CellDesigner/C2/Overview-of-CellDesigner/English-timed

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Time
Narration
00:01 Hello and welcome to this overview Spoken Tutorial on CellDesigner.
00:08 In this tutorial, we will learn about the CellDesigner series and the content available in various tutorials under this series.
00:21 In this series, I have used Version 4.3.
00:27 This was the latest available version at the time of creating this tutorial series.
00:36 Version 4.3 and above, is recommended for practising these tutorials.
00:45 If you are a first-time user of CellDesigner, please go through the Startup Guide Version 4.3.
00:56 This contains step-by-step instructions of using the tool bar.
01:03 The link for the guide is as shown here.
01:08 Now, we will briefly go through the individual tutorials in this series.
01:16 The very first tutorial in this series explains installation of CellDesigner on a Windows machine.
01:27 Here is a glimpse of the tutorial.
01:43 The next tutorial will help us to understand Menu and toolbars,
01:52 areas in CellDesigner and components in CellDesigner.
1:59 This tutorial was recorded on Windows OS.
02:05 However, all the features explained therein will work in the same manner on Linux OS also.
02:17 Linux users should not skip this tutorial.
02:23 Let us have a look at this tutorial.
02:40 The next tutorial is Installation of CellDesigner on Linux.
02:47 Here is a glimpse of the tutorial.
03:00 The next tutorial is ‘Create and Edit Components’.
03:07 This will help us to know how: to open an already saved .xml file,
03:17 change the size, shape, color and thickness of the border in a Compartment.
03:26 create multiple files in CellDesigner,
03:30 learn about start-point and end-point of a Species,
03:37 change identity of Species and Reaction.
03:41 Let me play this tutorial.
03:52 The next tutorial will explain how to- use Macros,
03:59 move all components to another side of the draw area,
04:04 align a Reaction line , extend a Reaction line and Build a Process diagram using CellDesigner.
04:16 Let’s have a look at this tutorial.
04:30 The next tutorial ‘Customizing Diagram Layout’ will explain how to- change color, shape and width of a Reaction line,
04:44 add Anchor points to a Reaction line, align Components,
04:50 show/hide Reaction ids, add notes to Components,
04:57 edit Protein, edit information and get a bird’s eye view of the diagram.
05:06 Here is a glimpse of the tutorial.
05:18 Let us summarize.
05:20 In this tutorial we learnt about the Overview of the CellDesigner series.
05:29 Please refer http://spoken-tutorial.org for the detailed tutorials on each topic mentioned.
05:39 Watch the video at the following link. It summarizes the Spoken Tutorial project. If you do not have a good bandwidth please download and watch it.
05:52 The Spoken Tutorial Project Team - conducts Workshops and gives certificates to those

who pass an online test. For more details, please write to contact@spoken-tutorial.org

06:10 Spoken Tutorial Project is a part of Talk to a Teacher project. It is funded by NMEICT, MHRD, Government of India. More information on this mission is available at the given link.

http://spoken-tutorial.org/NMEICT-Intro

06:27 This is Bella Tony from IIT Bombay, signing off.

Thank you for joining.

Contributors and Content Editors

Jyotisolanki, Sandhya.np14