Difference between revisions of "Biopython/C2/Manipulating-Sequences/Khasi"

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|'''Time'''
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{| border=1
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|'''Narration'''
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| '''Time'''
 +
| '''Narration'''
 +
  
 
|-
 
|-
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| 00:01 Ngi pdiang sngewbha ia phi sha kane ka tutorial halor ka '''Manipulating Sequences.'''
+
| 00:01  
 +
| Ngi pdiang sngewbha ia phi sha kane ka tutorial halor ka '''Manipulating Sequences.'''
  
  
 
|-
 
|-
−
| 00:06  Ha kane ka tutorial, ngin pyndonkam ki tools ka '''Biopython''': Ban pynmih ia u random DNA sequence
+
| 00:06   
 +
| Ha kane ka tutorial, ngin pyndonkam ki tools ka '''Biopython''': Ban pynmih ia u random DNA sequence
  
 
|-
 
|-
 
| 00:13
 
| 00:13
−
  Phiah ia u DNA sequence ha ki jaka ba lah buh
+
| Phiah ia u DNA sequence ha ki jaka ba lah buh
  
 
|-
 
|-
 
| 00:17
 
| 00:17
−
  Pyndait lang ia artylli ki sequences ban pynlong kawei ka sequence ba thymmai
+
| Pyndait lang ia artylli ki sequences ban pynlong kawei ka sequence ba thymmai
  
 
|-
 
|-
 
| 00:22
 
| 00:22
−
  Wad ia ka jingjrong jong ka sequence
+
| Wad ia ka jingjrong jong ka sequence
  
 
|-
 
|-
Line 28: Line 32:
 
|-
 
|-
 
| 00:31
 
| 00:31
−
  Wad ia u base ba la thmu lane bynta jong u string
+
| Wad ia u base ba la thmu lane bynta jong u string
  
 
|-
 
|-
 
| 00:35
 
| 00:35
−
  Pynkylla ia ka '''sequence object''' sha ka mutable sequence object
+
| Pynkylla ia ka '''sequence object''' sha ka mutable sequence object
  
 
|-
 
|-
 
| 00:40
 
| 00:40
−
  Ban bud ia kane ka tutorial, phi dei ban tip bha ia ka undergraduate Biochemistry lane Bioinformatics
+
| Ban bud ia kane ka tutorial, phi dei ban tip bha ia ka undergraduate Biochemistry lane Bioinformatics
  
 
|-
 
|-
 
| 00:47
 
| 00:47
−
  Bad ka basic Python programming
+
| Bad ka basic Python programming
  
 
|-
 
|-
 
|  00:51
 
|  00:51
−
Lada em, peit ia ki tutorials '''Python''' ha ka link ba la ai
+
| Lada em, peit ia ki tutorials '''Python''' ha ka link ba la ai
  
 
|-
 
|-
 
| 00:56
 
| 00:56
−
  Ban record ia kane ka tutorial, nga pyndonkam da ka * '''Ubuntu OS''' version 14.10
+
| Ban record ia kane ka tutorial, nga pyndonkam da ka * '''Ubuntu OS''' version 14.10
  
 
|-
 
|-
 
| 01:03
 
| 01:03
−
  '''Python''' version 2.7.8
+
| '''Python''' version 2.7.8
  
 
|-
 
|-
 
| 01:07
 
| 01:07
−
  '''Ipython interpreter''' version 2.3.0
+
| '''Ipython interpreter''' version 2.3.0
  
 
|-
 
|-
 
| 01:12
 
| 01:12
−
  '''Biopython''' version 1.64.
+
|  '''Biopython''' version 1.64.
  
 
|-
 
|-
 
| 01:16
 
| 01:16
−
  To ngin ia plie iaka '''terminal''' bad sdang ia ka '''ipython interpreter'''
+
|  To ngin ia plie iaka '''terminal''' bad sdang ia ka '''ipython interpreter'''
  
 
|-
 
|-
 
| 01:21
 
| 01:21
−
  Nion lang ia u '''Ctrl, Alt''' and '''t''' key
+
|  Nion lang ia u '''Ctrl, Alt''' and '''t''' key
  
 
|-
 
|-
 
|01:26
 
|01:26
−
  Ha ka prompt, type: "ipython" bad sa nion '''Enter'''
+
|  Ha ka prompt, type: "ipython" bad sa nion '''Enter'''
  
 
|-
 
|-
 
| 01:31
 
| 01:31
−
  Ka '''Ipython''' prompt kan sa mih ha ka screen
+
|  Ka '''Ipython''' prompt kan sa mih ha ka screen
  
 
|-
 
|-
 
| 01:35
 
| 01:35
−
  Da kaba pyndonkam ia ka Biopython, ngi lah ban pynmih ia ka '''sequence object''' na ka bynta ka random DNA sequence ha kano kano ka jingjrong   
+
| Da kaba pyndonkam ia ka Biopython, ngi lah ban pynmih ia ka '''sequence object''' na ka bynta ka random DNA sequence ha kano kano ka jingjrong   
  
 
|-
 
|-
 
| 01:44
 
| 01:44
−
  To mynta ngin ia pynmih ia ka sequence object na ka bynta ka DNA sequence kaba 20 bases
+
| To mynta ngin ia pynmih ia ka sequence object na ka bynta ka DNA sequence kaba 20 bases
  
 
|-
 
|-
−
|01:50
+
| 01:50
−
  Ha ka prompt, type: "import random", bad nion '''Enter'''.
+
| Ha ka prompt, type: "import random", bad nion '''Enter'''.
  
 
|-
 
|-
 
| 01:56
 
| 01:56
−
  Nangta, import '''Seq '''module na '''Bio '''package.
+
| Nangta, import '''Seq '''module na '''Bio '''package.
  
 
|-
 
|-
 
| 02:01
 
| 02:01
−
  Bunsien '''Seq''' ngi ju pronounce kum '''seek'''.
+
| Bunsien '''Seq''' ngi ju pronounce kum '''seek'''.
  
 
|-
 
|-
 
| 02:06
 
| 02:06
−
  Ha ka prompt, type: '''From Bio dot Seq import Seq'''. Nion '''Enter'''.
+
|  Ha ka prompt, type: '''From Bio dot Seq import Seq'''. Nion '''Enter'''.
  
 
|-
 
|-
 
| 02:15
 
| 02:15
−
  Ngin pyndonkam da ka '''Bio.Alphabet''' module ban pyntikna ia ki alphabets ha ka DNA sequence
+
|  Ngin pyndonkam da ka '''Bio.Alphabet''' module ban pyntikna ia ki alphabets ha ka DNA sequence
  
 
|-
 
|-
 
| 02:22
 
| 02:22
−
  Type: '''from Bio dot Alphabet import generic underscore dna.''' Nion '''Enter'''.
+
|  Type: '''from Bio dot Alphabet import generic underscore dna.''' Nion '''Enter'''.
  
 
|-
 
|-
 
| 02:32
 
| 02:32
−
  Type ia ki '''command''' harum ban shna ia ka sequence object na ka bynta ka randon DNA sequence.  
+
| Type ia ki '''command''' harum ban shna ia ka sequence object na ka bynta ka randon DNA sequence.  
  
 
|-
 
|-
 
| 02:38
 
| 02:38
−
  Buh ia ka sequence ha ka variable '''dna1'''
+
|  Buh ia ka sequence ha ka variable '''dna1'''
  
 
|-
 
|-
 
| 02:42
 
| 02:42
−
  Sngewbha peit: ha kane ka command, pyndonkam ar tylli ki single quotes ha ka jaka ka double quote. Nion '''Enter'''
+
| Sngewbha peit: ha kane ka command, pyndonkam ar tylli ki single quotes ha ka jaka ka double quote. Nion '''Enter'''
  
 
|-
 
|-
 
| 02:50
 
| 02:50
−
  Na ka bynta ka output, type: '''dna1'''. Nion '''Enter'''
+
| Na ka bynta ka output, type: '''dna1'''. Nion '''Enter'''
  
 
|-
 
|-
 
| 02:55
 
| 02:55
−
  Ka output ka pyni ia ka '''sequence object''' na ka bynta ka random DNA sequence.  
+
| Ka output ka pyni ia ka '''sequence object''' na ka bynta ka random DNA sequence.  
  
 
|-
 
|-
 
| 03:00
 
| 03:00
−
  Lada phi kwah ka sequence ba thymmai, nion u up-arrow key ban ioh ia ka juh ka command kum haneng. Nion '''Enter'''.  
+
| Lada phi kwah ka sequence ba thymmai, nion u up-arrow key ban ioh ia ka juh ka command kum haneng. Nion '''Enter'''.  
  
 
|-
 
|-
 
| 03:11
 
| 03:11
−
  Na ka bynta ka output, type ia ka kyrteng ka variable '''dna1.''' Nion '''Enter'''
+
| Na ka bynta ka output, type ia ka kyrteng ka variable '''dna1.''' Nion '''Enter'''
  
 
|-
 
|-
 
| 03:17
 
| 03:17
−
  Ka output ka pyni iaka DNA sequence ba thymmai kaba pher na kaba nyngkong.
+
| Ka output ka pyni iaka DNA sequence ba thymmai kaba pher na kaba nyngkong.
  
 
|-
 
|-
 
| 03:23
 
| 03:23
−
  Shaphang ka '''Sequence Objects'''
+
| Shaphang ka '''Sequence Objects'''
  
 
|-
 
|-
Line 152: Line 156:
 
|-
 
|-
 
| 03:30
 
| 03:30
−
  Te, bud beit ia ka rukom leh kumba leh ia ka Python strings.
+
| Te, bud beit ia ka rukom leh kumba leh ia ka Python strings.
  
 
|-
 
|-
 
| 03:35
 
| 03:35
−
  Ha ka Python, ngi niew ia ki characters ha ka string kaba sdang na 0, ha jaka u 1.
+
| Ha ka Python, ngi niew ia ki characters ha ka string kaba sdang na 0, ha jaka u 1.
  
 
|-
 
|-
 
| 03:41
 
| 03:41
−
  U character ba nyngkong ha ka sequence u dei u zero.
+
| U character ba nyngkong ha ka sequence u dei u zero.
  
 
|-
 
|-
 
| 03:45
 
| 03:45
−
  Phai biang sha ka terminal.
+
| Phai biang sha ka terminal.
  
 
|-
 
|-
 
| 03:47
 
| 03:47
−
  Teng teng ngi hap ban trei tang shi bynta jong ka sequence
+
| Teng teng ngi hap ban trei tang shi bynta jong ka sequence
  
 
|-
 
|-
 
| 03:52
 
| 03:52
−
  Mynta, ngin ia peit kumno ban sei ia ki bynta jong ka string bad buh ia ki kum ki sequence objects.
+
| Mynta, ngin ia peit kumno ban sei ia ki bynta jong ka string bad buh ia ki kum ki sequence objects.
  
 
|-
 
|-
 
| 03:58
 
| 03:58
−
  Nuksa, ngin '''slice''' ia ka DNA sequence ha ki ar bynta.
+
| Nuksa, ngin '''slice''' ia ka DNA sequence ha ki ar bynta.
  
 
|-
 
|-
 
| 04:04
 
| 04:04
−
  Nyngkong, hapdeng ki bases 6 bad 7.
+
| Nyngkong, hapdeng ki bases 6 bad 7.
  
 
|-
 
|-
 
| 04:08
 
| 04:08
−
  Kane kan sei ia ka fragment na kaba sdang jong ka sequence sha ka base ba 6 ha ka sequence.
+
| Kane kan sei ia ka fragment na kaba sdang jong ka sequence sha ka base ba 6 ha ka sequence.
  
 
|-
 
|-
 
| 04:15
 
| 04:15
−
  Ka slice ba ar kan dei hapdeng ka bases 11 bad 12.
+
| Ka slice ba ar kan dei hapdeng ka bases 11 bad 12.
  
 
|-
 
|-
 
| 04:20
 
| 04:20
−
  Ka fragment ba ar kan dei na ka base ba 12 shaduh ba kut jong ka sequence.
+
| Ka fragment ba ar kan dei na ka base ba 12 shaduh ba kut jong ka sequence.
  
 
|-
 
|-
 
| 04:26
 
| 04:26
−
  Type ia ka command ba harum, ha ka prompt, ban sei ia ka fragment ba nyngkong.  
+
| Type ia ka command ba harum, ha ka prompt, ban sei ia ka fragment ba nyngkong.  
  
 
|-
 
|-
 
| 04:31
 
| 04:31
−
  '''String1 equal to dna1 within brackets 0 semi-colon 6.'''
+
| '''String1 equal to dna1 within brackets 0 semi-colon 6.'''
  
 
|-
 
|-
 
| 04:39
 
| 04:39
−
  '''string1''' ka dei ka variable ban lum ia ka fragment ba nyngkong.
+
| '''string1''' ka dei ka variable ban lum ia ka fragment ba nyngkong.
  
 
|-
 
|-
 
| 04:43
 
| 04:43
−
  Ki command ba bud kin long beit kum ha ka Python.
+
| Ki command ba bud kin long beit kum ha ka Python.
  
 
|-
 
|-
 
| 04:47
 
| 04:47
−
  Hapoh kine ki brackets dei ki jaka ba sdang bad ba sangeh ba ba la pyniakhlad da u colon.
+
| Hapoh kine ki brackets dei ki jaka ba sdang bad ba sangeh ba ba la pyniakhlad da u colon.
  
 
|-
 
|-
 
| 04:53
 
| 04:53
−
  Kine ki jaka ki kynthup lang ia kaba sdang hynrei khlem kynthup ïaki ha ka jaka ba sangeh. Nion '''Enter'''.
+
| Kine ki jaka ki kynthup lang ia kaba sdang hynrei khlem kynthup ïaki ha ka jaka ba sangeh. Nion '''Enter'''.
  
 
|-
 
|-
 
| 05:01
 
| 05:01
−
  Ban peit ia ka output, type: "string1", nion '''Enter'''.
+
| Ban peit ia ka output, type: "string1", nion '''Enter'''.
  
 
|-
 
|-
 
| 05:04
 
| 05:04
−
  Ka output ka pyni ia ka fragment ba nyngkong kum ka sequence object.
+
| Ka output ka pyni ia ka fragment ba nyngkong kum ka sequence object.
  
 
|-
 
|-
 
| 05:10
 
| 05:10
−
  Ban sei ia ka string ba ar na ka sequence, nion ia u up-arrow key bad '''edit''' ia ka command kumne harum:  
+
| Ban sei ia ka string ba ar na ka sequence, nion ia u up-arrow key bad '''edit''' ia ka command kumne harum:  
  
 
|-
 
|-
 
| 05:17
 
| 05:17
−
  Pynkylla ia ka ka kyrteng jong u variable sha ka '''string2''' bad jaka sha u '''11 '''bad '''20'''.   
+
| Pynkylla ia ka ka kyrteng jong u variable sha ka '''string2''' bad jaka sha u '''11 '''bad '''20'''.   
  
 
|-
 
|-
 
| 05:24
 
| 05:24
−
  Na ka bynta ka output, type: "string2". Nion '''Enter'''.
+
| Na ka bynta ka output, type: "string2". Nion '''Enter'''.
  
 
|-
 
|-
 
| 05:30
 
| 05:30
−
  Mynta ngi ioh ia ka fragment ba ar ruh kum ka sequence object.
+
| Mynta ngi ioh ia ka fragment ba ar ruh kum ka sequence object.
  
 
|-
 
|-
 
| 05:34
 
| 05:34
−
  To ngin pynlong ïaki kawei, kata, ban pyndait lang ia baroh ar ki '''strings ''' ban pynlong u fragment ba thymmai.
+
| To ngin pynlong ïaki kawei, kata, ban pyndait lang ia baroh ar ki '''strings ''' ban pynlong u fragment ba thymmai.
  
 
|-
 
|-
 
| 05:42
 
| 05:42
−
  Buh ia ka sequence ba thymmai ha ka variable '''dna2'''.
+
| Buh ia ka sequence ba thymmai ha ka variable '''dna2'''.
  
 
|-
 
|-
 
| 05:46
 
| 05:46
−
  Type: '''dna2 equal to string1 plus string2'''. Nion '''Enter'''.
+
| Type: '''dna2 equal to string1 plus string2'''. Nion '''Enter'''.
  
 
|-
 
|-
 
| 05:53
 
| 05:53
−
  Sngewbha kynmaw ba: ngim lah ban thep ki sequence da ki alphabets ki bym iahap.
+
| Sngewbha kynmaw ba: ngim lah ban thep ki sequence da ki alphabets ki bym iahap.
  
 
|-
 
|-
 
| 05:59
 
| 05:59
−
  Kata ka mut, ngim lah ban pynlong kawei ia ka DNA sequence bad ka protein sequence ban ioh ia ka sequence ba thymmai.
+
| Kata ka mut, ngim lah ban pynlong kawei ia ka DNA sequence bad ka protein sequence ban ioh ia ka sequence ba thymmai.
  
 
|-
 
|-
 
| 06:07
 
| 06:07
−
  Ki ar tylli ki sequences ki dei ban don kajuh ka alphabet attribute.
+
| Ki ar tylli ki sequences ki dei ban don kajuh ka alphabet attribute.
  
 
|-
 
|-
 
| 06:12
 
| 06:12
−
  Ban peit ia ka output, type: "dna2". Nion '''Enter'''.
+
| Ban peit ia ka output, type: "dna2". Nion '''Enter'''.
  
 
|-
 
|-
 
| 06:17
 
| 06:17
−
  Ka output ka pyni ia ka sequence ba thymmai kaba dei ka jing pyndait lang jong u '''string1''' bad '''string2.'''
+
| Ka output ka pyni ia ka sequence ba thymmai kaba dei ka jing pyndait lang jong u '''string1''' bad '''string2.'''
  
 
|-
 
|-
 
| 06:23
 
| 06:23
−
  Ban ioh ia ka jingjrong jong ka sequence ba thymmai, ngin pyndonkam da ka '''len '''function.  
+
| Ban ioh ia ka jingjrong jong ka sequence ba thymmai, ngin pyndonkam da ka '''len '''function.  
  
 
|-
 
|-
 
| 06:29
 
| 06:29
−
  Type: "len" hapoh parenthesis"dna2". Nion '''Enter'''.
+
| Type: "len" hapoh parenthesis"dna2". Nion '''Enter'''.
  
 
|-
 
|-
 
| 06:34
 
| 06:34
−
  Ka output ka pyni ia ka sequence kaba jrong 15 bases.
+
| Ka output ka pyni ia ka sequence kaba jrong 15 bases.
  
 
|-
 
|-
 
| 06:39
 
| 06:39
−
  Ngi lah ruh ban niew ia ka jingdon jong ki bases bapher bapher ha ka sequence.  
+
| Ngi lah ruh ban niew ia ka jingdon jong ki bases bapher bapher ha ka sequence.  
  
 
|-
 
|-
 
| 06:44
 
| 06:44
−
  Ban leh ia kane, ngin pyndonkam da ka '''count  ''' function.
+
| Ban leh ia kane, ngin pyndonkam da ka '''count  ''' function.
  
 
|-
 
|-
 
| 06:47
 
| 06:47
−
  Kum ka nuksa – ban niew ia ka jingdon jong u alanines ba don ha ka sequence, ngi type ia ka command ka ba harum: '''dna2 dot count''' hapoh parenthesis hapoh double quotes alphabet A.  
+
| Kum ka nuksa – ban niew ia ka jingdon jong u alanines ba don ha ka sequence, ngi type ia ka command ka ba harum: '''dna2 dot count''' hapoh parenthesis hapoh double quotes alphabet A.  
  
 
|-
 
|-
 
| 07:02
 
| 07:02
−
  Nion '''Enter'''.
+
| Nion '''Enter'''.
  
 
|-
 
|-
 
| 07:04
 
| 07:04
−
  Ka output ka pyni ia ka jingdon jong u alanines ha ka sequence '''dna2'''.
+
| Ka output ka pyni ia ka jingdon jong u alanines ha ka sequence '''dna2'''.
  
 
|-
 
|-
 
| 07:10
 
| 07:10
−
  Ban shem ia u jait base ne u dkhot jong u string, ngin pyndonkam da u '''find  ''' function.
+
| Ban shem ia u jait base ne u dkhot jong u string, ngin pyndonkam da u '''find  ''' function.
  
 
|-
 
|-
 
| 07:16
 
| 07:16
−
  Type: '''dna2 dot find''' hapoh parenthesis hapoh double quotes "GC". Nion '''Enter'''.
+
| Type: '''dna2 dot find''' hapoh parenthesis hapoh double quotes "GC". Nion '''Enter'''.
  
 
|-
 
|-
 
| 07:26
 
| 07:26
−
  Ka output ka pyni ia ka jaka ba nyngkong kaba mih ka '''GC''' ha u string.
+
| Ka output ka pyni ia ka jaka ba nyngkong kaba mih ka '''GC''' ha u string.
  
 
|-
 
|-
 
| 07:32
 
| 07:32
−
  Ha ka jingshisha ia ka sequence object um ju lah ban pynkylla.
+
| Ha ka jingshisha ia ka sequence object um ju lah ban pynkylla.
  
 
|-
 
|-
 
| 07:35
 
| 07:35
−
  Ban pynkylla ia ka sequence, ngi dei ban pynkylla iaka sha ka mutable sequence object.
+
| Ban pynkylla ia ka sequence, ngi dei ban pynkylla iaka sha ka mutable sequence object.
  
 
|-
 
|-
 
| 07:41
 
| 07:41
−
  Ban leh ia kane, type: '''dna3 equal to dna2 dot to mutable''' plie bad khang ia u parenthesis. Nion '''Enter'''.
+
| Ban leh ia kane, type: '''dna3 equal to dna2 dot to mutable''' plie bad khang ia u parenthesis. Nion '''Enter'''.
  
 
|-
 
|-
 
| 07:52
 
| 07:52
−
  Na ka bynta ka output, type: '''dna3''' Nion '''Enter'''.
+
| Na ka bynta ka output, type: '''dna3''' Nion '''Enter'''.
  
 
|-
 
|-
 
| 07:55
 
| 07:55
−
  Mynta ngin sa lah ban pynkylla ia ka sequence object.
+
| Mynta ngin sa lah ban pynkylla ia ka sequence object.
  
 
|-
 
|-
 
| 07:59
 
| 07:59
−
  To ngin ia bujli ia u '''base''' na ka sequence.
+
| To ngin ia bujli ia u '''base''' na ka sequence.
  
 
|-
 
|-
 
| 08:01
 
| 08:01
−
  Kum ka nuksa – ban bujli ia u base uba don ha ka jaka ba 5 sha ka alanine, type: '''dna3 within brackets 5 equal to within double quotes alphabet A.'''  Nion '''Enter'''.
+
| Kum ka nuksa – ban bujli ia u base uba don ha ka jaka ba 5 sha ka alanine, type: '''dna3 within brackets 5 equal to within double quotes alphabet A.'''  Nion '''Enter'''.
  
 
|-
 
|-
 
| 08:19
 
| 08:19
−
  Na ka bynta ka output, type: '''dna3'''. Nion '''Enter'''.
+
| Na ka bynta ka output, type: '''dna3'''. Nion '''Enter'''.
  
 
|-
 
|-
 
| 08:24
 
| 08:24
−
  Khmih thuh ia ka output. Ka '''cytosine''' ha ka jaka ba 5 la shah bujli da u '''alanine'''.
+
| Khmih thuh ia ka output. Ka '''cytosine''' ha ka jaka ba 5 la shah bujli da u '''alanine'''.
  
 
|-
 
|-
 
| 08:31
 
| 08:31
−
  Ban bujli ia ka shi bynta jong u '''string''', type ia ka command ba harum.
+
| Ban bujli ia ka shi bynta jong u '''string''', type ia ka command ba harum.
  
 
|-
 
|-
 
| 08:35
 
| 08:35
−
  '''Dna3 within brackets 6 semi-colon 10 equal to within double quotes ATGC.''' Nion '''Enter'''.
+
| '''Dna3 within brackets 6 semi-colon 10 equal to within double quotes ATGC.''' Nion '''Enter'''.
  
 
|-
 
|-
 
| 08:45
 
| 08:45
−
  Na ka bynta ka output, type: '''dna3'''. Nion '''Enter'''.
+
| Na ka bynta ka output, type: '''dna3'''. Nion '''Enter'''.
  
 
|-
 
|-
 
| 08:52
 
| 08:52
−
  Ka output ka pyni ia ki 4 tylli ki bases na ka jaka ba 6 haduh 9 kiba shah bujli da ki bases '''ATGC''' ba thymmai.  
+
| Ka output ka pyni ia ki 4 tylli ki bases na ka jaka ba 6 haduh 9 kiba shah bujli da ki bases '''ATGC''' ba thymmai.  
  
 
|-
 
|-
 
| 09:01
 
| 09:01
−
  Shisien ba phi lahdep dep pynkylla ia ka sequence object, pynkylla biang ia ka sha ka “read only” form.
+
| Shisien ba phi lahdep dep pynkylla ia ka sequence object, pynkylla biang ia ka sha ka “read only” form.
  
 
|-
 
|-
 
| 09:07
 
| 09:07
−
  Type kumne harum'''dna4 equal to dna3 dot to seq open and close parenthesis'''. Nion '''Enter'''.
+
| Type kumne harum'''dna4 equal to dna3 dot to seq open and close parenthesis'''. Nion '''Enter'''.
  
 
|-
 
|-
 
| 09:19
 
| 09:19
−
  Na ka bynta ka output, type: '''dna4.''' Nion '''Enter'''.
+
| Na ka bynta ka output, type: '''dna4.''' Nion '''Enter'''.
  
 
|-
 
|-
 
| 09:25
 
| 09:25
−
  To ngin batai lyngkot
+
| To ngin batai lyngkot
 +
 
 
|-
 
|-
 
| 09:27
 
| 09:27
−
  Ha kane ka tutorial, ngi lah pule ban *  Generate a random DNA sequence
+
| Ha kane ka tutorial, ngi lah pule ban *  Generate a random DNA sequence
  
 
|-
 
|-
 
| 09:32
 
| 09:32
−
  Slice ia ka DNA sequence ha ki jaka ba lah buh.
+
| Slice ia ka DNA sequence ha ki jaka ba lah buh.
  
 
|-
 
|-
 
| 09:36
 
| 09:36
−
  Pyndait lang ar tylli ki sequence ban ioh ia ka sequence ba thymmai, kata ka mut, ban pynlong kawei.
+
| Pyndait lang ar tylli ki sequence ban ioh ia ka sequence ba thymmai, kata ka mut, ban pynlong kawei.
  
 
|-
 
|-
 
| 09:43
 
| 09:43
−
  Ngi lah pule ruh kumno ban: * use '''len, count''' bad '''find''' functions.
+
| Ngi lah pule ruh kumno ban: * use '''len, count''' bad '''find''' functions.
  
  
 
|-
 
|-
 
| 09:49
 
| 09:49
−
  Ban pynkylla ia ka sequence object sha ka mutable sequence object bad ban bujli ia u base lane shi bynta jong u string.
+
| Ban pynkylla ia ka sequence object sha ka mutable sequence object bad ban bujli ia u base lane shi bynta jong u string.
  
 
|-
 
|-
 
| 09:57
 
| 09:57
−
  Na ka bynta ka assignment, wad ia uno uno u '''DNA sequence''' uba 30 bases.
+
| Na ka bynta ka assignment, wad ia uno uno u '''DNA sequence''' uba 30 bases.
  
 
|-
 
|-
 
| 10:02
 
| 10:02
−
  Da kaba pyndonkam da u Biopython tools, khein ia ka GC percentage bad molecular weight jong ka sequence.  
+
| Da kaba pyndonkam da u Biopython tools, khein ia ka GC percentage bad molecular weight jong ka sequence.  
  
 
|-
 
|-
 
| 10:09
 
| 10:09
−
  Ka assignment ba lah dep jong phi kan long kumne harum.
+
| Ka assignment ba lah dep jong phi kan long kumne harum.
  
 
|-
 
|-
 
| 10:13
 
| 10:13
−
  Ka output ka pyni ia ka '''GC'''content ha ka percentage.
+
| Ka output ka pyni ia ka '''GC'''content ha ka percentage.
  
 
|-
 
|-
 
| 10:18
 
| 10:18
−
  Ka output ka pyni ia ka molecular weight jong ka DNA sequence.
+
| Ka output ka pyni ia ka molecular weight jong ka DNA sequence.
  
 
|-
 
|-
 
| 10:23
 
| 10:23
−
  Kane ka video ka batai lyngkot ia ka Spoken Tutorial project.  
+
| Kane ka video ka batai lyngkot ia ka Spoken Tutorial project.  
  
 
|-
 
|-
 
| 10:26
 
| 10:26
−
  Lada phim don ka bandwidth ba biang, phi lah ban download bad peit ia ka.
+
| Lada phim don ka bandwidth ba biang, phi lah ban download bad peit ia ka.
  
 
|-
 
|-
 
| 10:30
 
| 10:30
−
  Ngi pynlong workshops bad ai certificates.
+
| Ngi pynlong workshops bad ai certificates.
  
 
|-
 
|-
 
| 10:32
 
| 10:32
−
  Sngewbha thoh sha ngi
+
| Sngewbha thoh sha ngi
  
 
|-
 
|-
 
| 10:35
 
| 10:35
−
  Ia ka Spoken-Tutorial project la kyrshan da ka National Mission on Education through ICT, MHRD, Government of India.
+
| Ia ka Spoken-Tutorial project la kyrshan da ka National Mission on Education through ICT, MHRD, Government of India.
  
 
|-
 
|-
 
| 10:43
 
| 10:43
−
  ïa kane ka script la pynkylla sha ka Ktien Khasi da u Yuwanki Yolande Kharlukhi na Shillong, Bad ma nga u Hezekiah Lyngdoh, ngan pynkut noh. Khublei ba phi la ïasnoh lang.
+
| ïa kane ka script la pynkylla sha ka Ktien Khasi da u Yuwanki Yolande Kharlukhi na Shillong, Bad ma nga u Hezekiah Lyngdoh, ngan pynkut noh. Khublei ba phi la ïasnoh lang.
−
|}
+

Revision as of 11:24, 29 May 2018

Time Narration


00:01 Ngi pdiang sngewbha ia phi sha kane ka tutorial halor ka Manipulating Sequences.


00:06 Ha kane ka tutorial, ngin pyndonkam ki tools ka Biopython: Ban pynmih ia u random DNA sequence
00:13 Phiah ia u DNA sequence ha ki jaka ba lah buh
00:17 Pyndait lang ia artylli ki sequences ban pynlong kawei ka sequence ba thymmai
00:22 Wad ia ka jingjrong jong ka sequence
00:26 
   Niew ia ki number jong ki  base lane ki dkhot jong u string
00:31 Wad ia u base ba la thmu lane bynta jong u string
00:35 Pynkylla ia ka sequence object sha ka mutable sequence object
00:40 Ban bud ia kane ka tutorial, phi dei ban tip bha ia ka undergraduate Biochemistry lane Bioinformatics
00:47 Bad ka basic Python programming
00:51 Lada em, peit ia ki tutorials Python ha ka link ba la ai
00:56 Ban record ia kane ka tutorial, nga pyndonkam da ka * Ubuntu OS version 14.10
01:03 Python version 2.7.8
01:07 Ipython interpreter version 2.3.0
01:12 Biopython version 1.64.
01:16 To ngin ia plie iaka terminal bad sdang ia ka ipython interpreter
01:21 Nion lang ia u Ctrl, Alt and t key
01:26 Ha ka prompt, type: "ipython" bad sa nion Enter
01:31 Ka Ipython prompt kan sa mih ha ka screen
01:35 Da kaba pyndonkam ia ka Biopython, ngi lah ban pynmih ia ka sequence object na ka bynta ka random DNA sequence ha kano kano ka jingjrong
01:44 To mynta ngin ia pynmih ia ka sequence object na ka bynta ka DNA sequence kaba 20 bases
01:50 Ha ka prompt, type: "import random", bad nion Enter.
01:56 Nangta, import Seq module na Bio package.
02:01 Bunsien Seq ngi ju pronounce kum seek.
02:06 Ha ka prompt, type: From Bio dot Seq import Seq. Nion Enter.
02:15 Ngin pyndonkam da ka Bio.Alphabet module ban pyntikna ia ki alphabets ha ka DNA sequence
02:22 Type: from Bio dot Alphabet import generic underscore dna. Nion Enter.
02:32 Type ia ki command harum ban shna ia ka sequence object na ka bynta ka randon DNA sequence.
02:38 Buh ia ka sequence ha ka variable dna1
02:42 Sngewbha peit: ha kane ka command, pyndonkam ar tylli ki single quotes ha ka jaka ka double quote. Nion Enter
02:50 Na ka bynta ka output, type: dna1. Nion Enter
02:55 Ka output ka pyni ia ka sequence object na ka bynta ka random DNA sequence.
03:00 Lada phi kwah ka sequence ba thymmai, nion u up-arrow key ban ioh ia ka juh ka command kum haneng. Nion Enter.
03:11 Na ka bynta ka output, type ia ka kyrteng ka variable dna1. Nion Enter
03:17 Ka output ka pyni iaka DNA sequence ba thymmai kaba pher na kaba nyngkong.
03:23 Shaphang ka Sequence Objects
03:25 
  Ka sequence objects ha ka jingshisha ka long kum ka Python strings.
03:30 Te, bud beit ia ka rukom leh kumba leh ia ka Python strings.
03:35 Ha ka Python, ngi niew ia ki characters ha ka string kaba sdang na 0, ha jaka u 1.
03:41 U character ba nyngkong ha ka sequence u dei u zero.
03:45 Phai biang sha ka terminal.
03:47 Teng teng ngi hap ban trei tang shi bynta jong ka sequence
03:52 Mynta, ngin ia peit kumno ban sei ia ki bynta jong ka string bad buh ia ki kum ki sequence objects.
03:58 Nuksa, ngin slice ia ka DNA sequence ha ki ar bynta.
04:04 Nyngkong, hapdeng ki bases 6 bad 7.
04:08 Kane kan sei ia ka fragment na kaba sdang jong ka sequence sha ka base ba 6 ha ka sequence.
04:15 Ka slice ba ar kan dei hapdeng ka bases 11 bad 12.
04:20 Ka fragment ba ar kan dei na ka base ba 12 shaduh ba kut jong ka sequence.
04:26 Type ia ka command ba harum, ha ka prompt, ban sei ia ka fragment ba nyngkong.
04:31 String1 equal to dna1 within brackets 0 semi-colon 6.
04:39 string1 ka dei ka variable ban lum ia ka fragment ba nyngkong.
04:43 Ki command ba bud kin long beit kum ha ka Python.
04:47 Hapoh kine ki brackets dei ki jaka ba sdang bad ba sangeh ba ba la pyniakhlad da u colon.
04:53 Kine ki jaka ki kynthup lang ia kaba sdang hynrei khlem kynthup ïaki ha ka jaka ba sangeh. Nion Enter.
05:01 Ban peit ia ka output, type: "string1", nion Enter.
05:04 Ka output ka pyni ia ka fragment ba nyngkong kum ka sequence object.
05:10 Ban sei ia ka string ba ar na ka sequence, nion ia u up-arrow key bad edit ia ka command kumne harum:
05:17 Pynkylla ia ka ka kyrteng jong u variable sha ka string2 bad jaka sha u 11 bad 20.
05:24 Na ka bynta ka output, type: "string2". Nion Enter.
05:30 Mynta ngi ioh ia ka fragment ba ar ruh kum ka sequence object.
05:34 To ngin pynlong ïaki kawei, kata, ban pyndait lang ia baroh ar ki strings ban pynlong u fragment ba thymmai.
05:42 Buh ia ka sequence ba thymmai ha ka variable dna2.
05:46 Type: dna2 equal to string1 plus string2. Nion Enter.
05:53 Sngewbha kynmaw ba: ngim lah ban thep ki sequence da ki alphabets ki bym iahap.
05:59 Kata ka mut, ngim lah ban pynlong kawei ia ka DNA sequence bad ka protein sequence ban ioh ia ka sequence ba thymmai.
06:07 Ki ar tylli ki sequences ki dei ban don kajuh ka alphabet attribute.
06:12 Ban peit ia ka output, type: "dna2". Nion Enter.
06:17 Ka output ka pyni ia ka sequence ba thymmai kaba dei ka jing pyndait lang jong u string1 bad string2.
06:23 Ban ioh ia ka jingjrong jong ka sequence ba thymmai, ngin pyndonkam da ka len function.
06:29 Type: "len" hapoh parenthesis"dna2". Nion Enter.
06:34 Ka output ka pyni ia ka sequence kaba jrong 15 bases.
06:39 Ngi lah ruh ban niew ia ka jingdon jong ki bases bapher bapher ha ka sequence.
06:44 Ban leh ia kane, ngin pyndonkam da ka count function.
06:47 Kum ka nuksa – ban niew ia ka jingdon jong u alanines ba don ha ka sequence, ngi type ia ka command ka ba harum: dna2 dot count hapoh parenthesis hapoh double quotes alphabet A.
07:02 Nion Enter.
07:04 Ka output ka pyni ia ka jingdon jong u alanines ha ka sequence dna2.
07:10 Ban shem ia u jait base ne u dkhot jong u string, ngin pyndonkam da u find function.
07:16 Type: dna2 dot find hapoh parenthesis hapoh double quotes "GC". Nion Enter.
07:26 Ka output ka pyni ia ka jaka ba nyngkong kaba mih ka GC ha u string.
07:32 Ha ka jingshisha ia ka sequence object um ju lah ban pynkylla.
07:35 Ban pynkylla ia ka sequence, ngi dei ban pynkylla iaka sha ka mutable sequence object.
07:41 Ban leh ia kane, type: dna3 equal to dna2 dot to mutable plie bad khang ia u parenthesis. Nion Enter.
07:52 Na ka bynta ka output, type: dna3 Nion Enter.
07:55 Mynta ngin sa lah ban pynkylla ia ka sequence object.
07:59 To ngin ia bujli ia u base na ka sequence.
08:01 Kum ka nuksa – ban bujli ia u base uba don ha ka jaka ba 5 sha ka alanine, type: dna3 within brackets 5 equal to within double quotes alphabet A. Nion Enter.
08:19 Na ka bynta ka output, type: dna3. Nion Enter.
08:24 Khmih thuh ia ka output. Ka cytosine ha ka jaka ba 5 la shah bujli da u alanine.
08:31 Ban bujli ia ka shi bynta jong u string, type ia ka command ba harum.
08:35 Dna3 within brackets 6 semi-colon 10 equal to within double quotes ATGC. Nion Enter.
08:45 Na ka bynta ka output, type: dna3. Nion Enter.
08:52 Ka output ka pyni ia ki 4 tylli ki bases na ka jaka ba 6 haduh 9 kiba shah bujli da ki bases ATGC ba thymmai.
09:01 Shisien ba phi lahdep dep pynkylla ia ka sequence object, pynkylla biang ia ka sha ka “read only” form.
09:07 Type kumne harumdna4 equal to dna3 dot to seq open and close parenthesis. Nion Enter.
09:19 Na ka bynta ka output, type: dna4. Nion Enter.
09:25 To ngin batai lyngkot
09:27 Ha kane ka tutorial, ngi lah pule ban * Generate a random DNA sequence
09:32 Slice ia ka DNA sequence ha ki jaka ba lah buh.
09:36 Pyndait lang ar tylli ki sequence ban ioh ia ka sequence ba thymmai, kata ka mut, ban pynlong kawei.
09:43 Ngi lah pule ruh kumno ban: * use len, count bad find functions.


09:49 Ban pynkylla ia ka sequence object sha ka mutable sequence object bad ban bujli ia u base lane shi bynta jong u string.
09:57 Na ka bynta ka assignment, wad ia uno uno u DNA sequence uba 30 bases.
10:02 Da kaba pyndonkam da u Biopython tools, khein ia ka GC percentage bad molecular weight jong ka sequence.
10:09 Ka assignment ba lah dep jong phi kan long kumne harum.
10:13 Ka output ka pyni ia ka GCcontent ha ka percentage.
10:18 Ka output ka pyni ia ka molecular weight jong ka DNA sequence.
10:23 Kane ka video ka batai lyngkot ia ka Spoken Tutorial project.
10:26 Lada phim don ka bandwidth ba biang, phi lah ban download bad peit ia ka.
10:30 Ngi pynlong workshops bad ai certificates.
10:32 Sngewbha thoh sha ngi
10:35 Ia ka Spoken-Tutorial project la kyrshan da ka National Mission on Education through ICT, MHRD, Government of India.
10:43 ïa kane ka script la pynkylla sha ka Ktien Khasi da u Yuwanki Yolande Kharlukhi na Shillong, Bad ma nga u Hezekiah Lyngdoh, ngan pynkut noh. Khublei ba phi la ïasnoh lang.

Contributors and Content Editors

Hezekiah2016, PoojaMoolya

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