Difference between revisions of "CellDesigner/C2/Overview-of-CellDesigner/English-timed"
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| 00:08 | | 00:08 | ||
− | | In this | + | | In this tutorial, we will learn about the '''CellDesigner''' series and the content available in various tutorials under this series. |
|- | |- | ||
| 00:21 | | 00:21 | ||
− | | In this | + | | In this series, I have used '''Version 4.3.''' |
|- | |- | ||
| 00:27 | | 00:27 | ||
− | |This was the latest available version at the time of creating this | + | |This was the latest available version at the time of creating this tutorial series. |
|- | |- | ||
| 00:36 | | 00:36 | ||
− | |'''Version 4.3 '''and above is recommended for practising these | + | |'''Version 4.3 '''and above, is recommended for practising these tutorials. |
|- | |- | ||
| 00:45 | | 00:45 | ||
− | | If you are a first-time user of '''CellDesigner''' | + | | If you are a first-time user of '''CellDesigner''', please go through the '''Startup Guide Version 4.3'''. |
|- | |- | ||
Line 38: | Line 38: | ||
|- | |- | ||
| 01:08 | | 01:08 | ||
− | | Now, we will briefly go through the individual | + | | Now, we will briefly go through the individual tutorials in this series. |
|- | |- | ||
| 01:16 | | 01:16 | ||
− | | The very first | + | | The very first tutorial in this series explains installation of '''CellDesigner''' on a '''Windows''' machine. |
|- | |- | ||
| 01:27 | | 01:27 | ||
− | | Here is a glimpse of the | + | | Here is a glimpse of the tutorial. |
|- | |- | ||
| 01:43 | | 01:43 | ||
− | | The next | + | | The next tutorial will help us to understand Menu and toolbars, |
|- | |- | ||
| 01:52 | | 01:52 | ||
− | | | + | | areas in '''CellDesigner''' and components in '''CellDesigner'''. |
|- | |- | ||
| 1:59 | | 1:59 | ||
− | | This | + | | This tutorial was recorded on '''Windows OS'''. |
|- | |- | ||
| 02:05 | | 02:05 | ||
− | |However, all the features explained therein | + | |However, all the features explained therein will work in the same manner on '''Linux OS''' also. |
|- | |- | ||
| 02:17 | | 02:17 | ||
− | |'''Linux''' users should not skip this | + | |'''Linux''' users should not skip this tutorial. |
|- | |- | ||
| 02:23 | | 02:23 | ||
− | | Let us have a look at this | + | | Let us have a look at this tutorial. |
|- | |- | ||
| 02:40 | | 02:40 | ||
− | | The next | + | | The next tutorial is '''Installation of CellDesigner on Linux.''' |
|- | |- | ||
| 02:47 | | 02:47 | ||
− | | Here is a glimpse of the | + | | Here is a glimpse of the tutorial. |
|- | |- | ||
Line 86: | Line 86: | ||
|- | |- | ||
| 03:07 | | 03:07 | ||
− | |This will help us to know how | + | |This will help us to know how: to open an already saved''' .xml file''', |
|- | |- | ||
| 03:17 | | 03:17 | ||
− | | | + | | change the size, shape, color and thickness of the border in a '''Compartment'''. |
|- | |- | ||
| 03:26 | | 03:26 | ||
− | | | + | |create multiple files in''' CellDesigner,''' |
|- | |- | ||
| 03:30 | | 03:30 | ||
− | | | + | |learn about start-point and end-point of a '''Species,''' |
|- | |- | ||
| 03:37 | | 03:37 | ||
− | | | + | |change identity of '''Species''' and '''Reaction.''' |
|- | |- | ||
| 03:41 | | 03:41 | ||
− | | Let me play this | + | | Let me play this tutorial. |
|- | |- | ||
| 03:52 | | 03:52 | ||
− | |The next | + | |The next tutorial will explain how to- use '''Macros''', |
|- | |- | ||
| 03:59 | | 03:59 | ||
− | | | + | |move all components to another side of the '''draw area''', |
|- | |- | ||
| 04:04 | | 04:04 | ||
− | | | + | | align a '''Reaction line''' , extend a '''Reaction line '''and '''Build''' a '''Process diagram''' using '''CellDesigner.''' |
|- | |- | ||
| 04:16 | | 04:16 | ||
− | | Let’s have a look at this | + | | Let’s have a look at this tutorial. |
|- | |- | ||
| 04:30 | | 04:30 | ||
− | | The next tutorial ‘'''Customizing Diagram Layout’''' will explain how to- | + | | The next tutorial ‘'''Customizing Diagram Layout’''' will explain how to- change color, shape and width of a '''Reaction line,''' |
|- | |- | ||
| 04:44 | | 04:44 | ||
− | | | + | | add '''Anchor points '''to a '''Reaction line,''' align '''Components,''' |
|- | |- | ||
| 04:50 | | 04:50 | ||
− | | | + | |show/hide '''Reaction ids''', add notes to '''Components''', |
|- | |- | ||
| 04:57 | | 04:57 | ||
− | | | + | |edit Protein, edit information and get a bird’s eye view of the diagram. |
|- | |- | ||
| 05:06 | | 05:06 | ||
− | | Here is a glimpse of the | + | | Here is a glimpse of the tutorial. |
|- | |- | ||
| 05:18 | | 05:18 | ||
− | |Let us summarize | + | |Let us summarize. |
|- | |- | ||
| 05:20 | | 05:20 | ||
− | |In this | + | |In this tutorial we learnt about the Overview of the '''CellDesigner''' series. |
|- | |- | ||
| 05:29 | | 05:29 | ||
− | |Please refer '''http://spoken-tutorial.org''' for the detailed | + | |Please refer '''http://spoken-tutorial.org''' for the detailed tutorials on each topic mentioned. |
|- | |- | ||
| 05:39 | | 05:39 | ||
− | | Watch the video at the following link It summarizes the '''Spoken Tutorial project.''' If you do not have a good '''bandwidth '''please download and watch it. | + | | Watch the video at the following link. It summarizes the '''Spoken Tutorial project.''' If you do not have a good '''bandwidth ''' please download and watch it. |
|- | |- | ||
| 05:52 | | 05:52 | ||
− | | The '''Spoken Tutorial | + | | The '''Spoken Tutorial''' Project Team - conducts '''Workshops''' and gives '''certificates''' to those |
who pass an '''online''' test. For more details, please write to '''contact@spoken-tutorial.org''' | who pass an '''online''' test. For more details, please write to '''contact@spoken-tutorial.org''' | ||
|- | |- | ||
| 06:10 | | 06:10 | ||
− | | '''Spoken Tutorial | + | | '''Spoken Tutorial''' Project is a part of '''Talk to a Teacher''' project. It is funded by NMEICT, MHRD, Government of India. More information on this mission is available at the given link. |
+ | '''http://spoken-tutorial.org/NMEICT-Intro''' | ||
|- | |- | ||
|06:27 | |06:27 | ||
− | | This is Bella Tony from '''IIT Bombay '''signing off. | + | | This is Bella Tony from '''IIT Bombay, '''signing off. |
Thank you for joining. | Thank you for joining. | ||
|} | |} |
Latest revision as of 12:52, 6 June 2018
|
|
00:01 | Hello and welcome to this overview Spoken Tutorial on CellDesigner. |
00:08 | In this tutorial, we will learn about the CellDesigner series and the content available in various tutorials under this series. |
00:21 | In this series, I have used Version 4.3. |
00:27 | This was the latest available version at the time of creating this tutorial series. |
00:36 | Version 4.3 and above, is recommended for practising these tutorials. |
00:45 | If you are a first-time user of CellDesigner, please go through the Startup Guide Version 4.3. |
00:56 | This contains step-by-step instructions of using the tool bar. |
01:03 | The link for the guide is as shown here. |
01:08 | Now, we will briefly go through the individual tutorials in this series. |
01:16 | The very first tutorial in this series explains installation of CellDesigner on a Windows machine. |
01:27 | Here is a glimpse of the tutorial. |
01:43 | The next tutorial will help us to understand Menu and toolbars, |
01:52 | areas in CellDesigner and components in CellDesigner. |
1:59 | This tutorial was recorded on Windows OS. |
02:05 | However, all the features explained therein will work in the same manner on Linux OS also. |
02:17 | Linux users should not skip this tutorial. |
02:23 | Let us have a look at this tutorial. |
02:40 | The next tutorial is Installation of CellDesigner on Linux. |
02:47 | Here is a glimpse of the tutorial. |
03:00 | The next tutorial is ‘Create and Edit Components’. |
03:07 | This will help us to know how: to open an already saved .xml file, |
03:17 | change the size, shape, color and thickness of the border in a Compartment. |
03:26 | create multiple files in CellDesigner, |
03:30 | learn about start-point and end-point of a Species, |
03:37 | change identity of Species and Reaction. |
03:41 | Let me play this tutorial. |
03:52 | The next tutorial will explain how to- use Macros, |
03:59 | move all components to another side of the draw area, |
04:04 | align a Reaction line , extend a Reaction line and Build a Process diagram using CellDesigner. |
04:16 | Let’s have a look at this tutorial. |
04:30 | The next tutorial ‘Customizing Diagram Layout’ will explain how to- change color, shape and width of a Reaction line, |
04:44 | add Anchor points to a Reaction line, align Components, |
04:50 | show/hide Reaction ids, add notes to Components, |
04:57 | edit Protein, edit information and get a bird’s eye view of the diagram. |
05:06 | Here is a glimpse of the tutorial. |
05:18 | Let us summarize. |
05:20 | In this tutorial we learnt about the Overview of the CellDesigner series. |
05:29 | Please refer http://spoken-tutorial.org for the detailed tutorials on each topic mentioned. |
05:39 | Watch the video at the following link. It summarizes the Spoken Tutorial project. If you do not have a good bandwidth please download and watch it. |
05:52 | The Spoken Tutorial Project Team - conducts Workshops and gives certificates to those
who pass an online test. For more details, please write to contact@spoken-tutorial.org |
06:10 | Spoken Tutorial Project is a part of Talk to a Teacher project. It is funded by NMEICT, MHRD, Government of India. More information on this mission is available at the given link. |
06:27 | This is Bella Tony from IIT Bombay, signing off.
Thank you for joining. |