CellDesigner/C2/Overview-of-CellDesigner/English

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Visual cue
Narration
Slide 1

Title Slide

Hello and welcome to this overview Spoken Tutorial on CellDesigner.
Slide 2

Learning objectives

In this tutorial, we will learn about-
  • the CellDesigner series
  • and the content available in various tutorials under this series.
Slide 4

This series is based on Version 4.3

In this series, I have used Version 4.3.

This was the latest available version at the time of creating this tutorial series.

Version 4.3 and above is recommended for practising these tutorials.

Slide 5

Note to learners:

First-time users of CellDesigner should go through the Startup Guide Version 4.3

If you are a first-time user of CellDesigner-
  • Please go through the Startup Guide Version 4.3

This contains step-by-step instructions of using the tool bar.

Slide 5

The link-

http

The link for the guide is as shown here.

Now, we will briefly go through the individual tutorials in this series.
Slide 6

Installation of CellDesigner on Windows machine

The very first tutorial in this series explains-
  • Installation of CellDesigner on a Windows machine.
Show “Installation of CellDesigner on Windowstutorial and play till end of the first sentence. Here is a glimpse of the tutorial.
Slide 7

Getting Started with CellDesigner

  • Menu and toolbars
  • Areas in CellDesigner
  • And Components in CellDesigner
The next tutorial will help us to understand-
  • Menu and toolbars
  • Areas in CellDesigner
  • And Components in CellDesigner
Slide 8

This tutorial was recorded on Windows OS.

Linux users should not skip this tutorial

This tutorial was recorded on Windows OS.

However, all the features explained therein, will work in the same manner on Linux OS, also.

Linux users should not skip this tutorial.

Show “Getting Started with CellDesignertutorial and play till end of the first sentence. Let us have a look at this tutorial.
Slide 9

Installation of CellDesigner on Linux

The next tutorial is Installation of CellDesigner on Linux.
Show ““Installation of CellDesigner on Linuxtutorial and play till end of the first sentence. Here is a glimpse of the tutorial.
Slide 10
Create and Edit Components
  • To open an already saved .xml file
  • Change the size, shape, color and thickness of the border in a Compartment.
  • Create multiple files in CellDesigner.
  • Learn about start-point and end-point of a Species.
  • Change identity of Species and Reaction.
The next tutorial is ‘Create and Edit Components’.

This will help us to know how-

  • To open an already saved .xml file
  • Change the size, shape, color and thickness of the border in a Compartment.
  • Create multiple files in CellDesigner.
  • Learn about start-point and end-point of a Species.
  • Change identity of Species and Reaction.

Show “Create and Edit Componentstutorial and play till end of the first sentence.

Let me play this tutorial.

Slide 11

“Build and Modify Process Diagram”

The next tutorial will explain how to-

  • Use Macros
  • Move all components to another side of the draw area
  • Align a Reaction line
  • Extend a Reaction line and
  • Build a Process diagram using CellDesigner.

Show “Build and Modify Process Diagram” tutorial and play till end of the first sentence.

Let’s have a look at this tutorial.

Slide 12

Customizing Diagram Layout

The next tutorial ‘Customizing Diagram Layout’ will explain how to-

  • Change color, shape and width of a Reaction line.
  • Add Anchor points to a Reaction line.
  • Align Components.
  • Show/hide Reaction ids
  • Add notes to Components
  • Edit Protein
  • Edit information and
  • Get a bird’s eye view of the diagram.

Show “Customizing Diagram Layouttutorial and play till end of the first sentence.

Here is a glimpse of the tutorial.

Slide 13

Summary Slide

Let us summarize:

In this tutorial we learnt about-

The Overview of the CellDesigner series.


Please refer http://spoken-tutorial.org for the detailed tutorials on each topic mentioned.

Slide 14

Acknowledgement

About the Spoken Tutorial project-

  • Watch the video at the following link
  • It summarizes the Spoken Tutorial project.
  • If you do not have a good bandwidth please download and watch it.
Slide 15

The Spoken Tutorial Project Team -

  • Conducts Workshops
  • And gives certificates to those who pass an online test.
  • For more details, please write to contact@spoken-tutorial.org
Slide 16

Spoken Tutorial Project is a part of Talk to a Teacher project.

It is funded by NMEICT, MHRD, Government of India.

More information on this Mission is available at the given link.

http://spoken-tutorial.org/NMEICT-Intro

This is Bella Tony from IIT Bombay signing off.

Thank you for joining.

Contributors and Content Editors

Bellatony911