GChemPaint/C3/Analysis-of-compounds/English

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Title of the tutorial: Analysis Of Compounds

Author: Madhuri Ganapathi

Key words: Molecular contextual menu,Chemical calculator, Composition, Isotropic pattern, video tutorial

Visual Cue Narration

Slide Number 1

Title Slide

Hello everyone.

Welcome to this tutorial on Analysis of Compounds in GChemPaint.

Slide Number 2

Learning Objectives

In this tutorial, we will learn about,
  • Molecular contextual menu
  • Save the molecule in .mol format
  • Add and edit a reaction
  • Add reaction conditions and reagents on the reaction arrow
  • Convert reaction molecules into 3D
Slide Number 3

System Requirement

For this tutorial I am using

Ubuntu Linux OS version 12.04.

GChemPaint version 0.12.10.

You will also require Internet connectivity.

Slide Number 4

Pre-requisites

To follow this tutorial, you should be familiar with

GChemPaint.

If not, for relevant tutorials, please visit our website.

Switch to GChemPaint window Let us open a new GChemPaint window.
Click on Use or manage templates tool. Click on Use or manage templates tool.

Templates tool property page opens below.

Click on Amino Acids.

Select Alanine from the list.

Point to Alanine structure.

Click on the Templates drop-down button, which shows Amino acids, by default.

Select Alanine from the list.

Structure of Alanine is loaded onto the Templates property page.

Click on structure>>click on the Display area to load it. Click on the structure and then click on the Display area to load it.
Now, I will explain about contextual menu of Alanine molecule.
Right click on molecule> submenu opens>>

select Molecule >> molecule's contextual menu opens.

Right click on the molecule.

A sub-menu opens.

Select Molecule; a contextual menu opens alongside.

Point to the menu items. This contextual menu contains different menu items.

I will discuss 3 of them in this tutorial, namely-

  • NIST webbook page for this molecule
  • PubChem page for this molecule and
  • Open in Calculator
Click on NIST webbook page for this molecule. Click on NIST webbook page for this molecule.
Move the cursor over the page. Alanine's NIST webpage opens.

It shows all the details about Alanine.

Right click on Alanine to open PubChem page for this molecule.

Come back to GChemPaint editor.

Now right click on Alanine to open PubChem page for this molecule.

PubChem webpage opens.

Contributors and Content Editors

Madhurig, Nancyvarkey

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