Difference between revisions of "GChemPaint/C3/Orbital-Overlap-and-3D-structures/English"

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(Created page with ''''Title of script''': '''Author: madhuri''' '''Keywords: Video Tutorial''' '''Outline:- ''' Draw Cyclohexane molecule Convert Cyclohexane to Cyclohexene Use Eraser tool t…')
 
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'''Title of script''':
 
  
'''Author: madhuri'''
 
 
'''Keywords: Video Tutorial'''
 
 
'''Outline:- '''
 
 
Draw Cyclohexane molecule
 
 
Convert Cyclohexane to Cyclohexene
 
 
Use Eraser tool to delete part of the structure
 
 
Convert Cyclohexene to Benzene.
 
 
Substitute Hydrogen of Benzene ring with other atoms
 
 
Substitute Hydrogen of Benzene ring with group of atoms
 
 
Use Add or modify a group of atoms tool to substitute atoms
 
 
Use tool Merge to merge two molecules
 
 
 
'''Please do the following corrections'''
 
 
1. Slide no 6 -Benzene Derivatives:Point no.2. can be written as
 
 
Hydrogen on the Benzene ring can be substituted by halogen atoms such as fluoro, chloro, bromo etc and Functional groups like hydroxy, nitro and methyl.
 
 
2. Slide no 10 and 11 -Assignment: Please change the substituents to names like, bromo(Br), iodo(I), Hydroxy(OH) with short forms in brackets.
 
 
 
3. On slide 11: the numbers of the points should be 6 and 7 not 1 and 2
 
 
4. On Slide 12:summary slide rewrite point 3 and 4 as a single point
 
 
Substitute hydrogen of the benzene ring with fluoro, methyl, nitro and carboxylic acid groups.
 
 
Always use full name of the functional group in your narration.
 
 
 
 
{| style="border-spacing:0;"
 
! <center>Visual Cue</center>
 
! <center>Narration</center>
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| '''Slide Number 1'''
 
 
'''Title Slide'''
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Hello everyone.
 
 
Welcome to this tutorial on '''Aromatic Molecular Structures '''in '''GChemPaint.'''
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| '''Slide Number 2'''
 
 
'''Learning Objectives'''
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| In this tutorial, we will learn to,
 
 
# Convert Cyclohexane to Cyclohexene
 
# Convert Cyclohexene to Benzene
 
# Substitute Hydrogen of Benzene ring with other atoms
 
# Substitute Hydrogen of Benzene ring with group of atoms
 
# Merge two molecules
 
 
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| '''Slide Number 3'''
 
 
'''System Requirement'''
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Here I am using.
 
 
'''Ubuntu Linux '''OS version 12.04.
 
 
'''GChemPaint v'''ersion 0.12.10.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| '''Slide Number 4'''
 
 
'''Pre-requisites'''
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| To follow this tutorial you should be familiar with.
 
 
 
'''GChemPaint''' chemical structure editor.
 
 
If not, for relevant tutorials, please visit our website.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| '''Switch to GChemPaint application.'''
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| I have opened a new''' GChemPaint''' application.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"|
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Let's first add a six membered cycle to the''' Display area.'''
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Click on '''Add a six membered cycle''' tool>>Click on '''Display area.'''
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Click on '''Add a six membered cycle''' tool.
 
 
Click on the '''Display area.'''
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Click on '''Add a bond or change the multiplicy of the existing one''' tool>>Add two bonds on every corner of the cycle.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Click on '''Add a bond or change the multiplicity of the existing one''' tool.
 
 
 
Add two bonds on every corner of the cycle.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Click and drag the bonds to proper position.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Position the bonds in such a way that no two bonds touch each other.
 
 
 
To do so, click and drag the bonds to proper position.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Point to the corners.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Let's display carbon atoms at all the corners of the cycle.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Right click on any one of the corner>>A submenu appears
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Right click on any one of the corner,
 
 
A submenu appears.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Select '''Atom''' >>click on '''Display symbol.'''
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Select '''Atom''' and then click on '''Display symbol.'''
 
 
 
Likewise add''' Carbon''' atoms on all corners of the cycle.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Press capital H on the keyboard.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| To add Hydrogen atoms to the bonds,
 
 
Press H on the keyboard.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Click on '''Add or modify an atom''' tool>>Click on all the bond positions.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Click on '''Add or modify an atom''' tool.
 
 
 
Click on all the bond positions.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Point to the Hydogen atoms.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Again, see to it that no two Hydrogens overlap each other.
 
 
 
The obtained structure is Cyclohexane(C6H12).
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"|
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Let's copy and paste the structure.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Press CTRL+A to select the structure >>Press CTRL+C to copy>>Press CTRL+V and paste
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Press CTRL+A to select the structure.
 
 
CTRL+C to copy and CTRL+V to paste the structure.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Point to the structure.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Let's convert the second '''Cyclohexane''' structure to '''Cyclohexene'''.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Click on the '''Eraser''' tool >> delete one of the hydrogen bonds of the adjacent carbon atoms.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Click on the '''Eraser''' tool.
 
 
Delete one hydrogen bond from each of the adjacent carbon atoms.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Click on '''Add a bond or change the multiplicity of the existing one''' tool>>click the bond between deleted hydrogen bonds.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Click on '''Add a bond or change the multiplicity of the existing one''' tool.
 
 
 
Then click on the bond between deleted hydrogen bonds.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Point to the structure.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| A double bond is formed.
 
 
 
The obtained structure is '''Cyclohexene(C6H10)'''
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"|
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Let's convert '''Cyclohexene''' to '''Cyclohexadiene '''and then to '''Benzene.'''
 
#
 
 
Ensure that Current element is '''Carbon.'''
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Click on the '''Eraser''' tool >> delete one of the hydrogen bonds of the adjacent carbon atoms.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Click on the '''Eraser''' tool.
 
 
 
Delete one hydrogen bond from each of the adjacent carbon atoms.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Click on '''Add a bond or change the multiplicity of the existing one''' tool
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Click on '''Add a bond or change the multiplicity of the existing one''' tool.
 
 
 
Then click on the bond between deleted hydrogen bonds.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Point to the bond.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| A second double bond is formed.
 
 
The obtained structure is '''Cyclohexadiene(C6H8)'''
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"|
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Likewise let's repeat the process to form the third double bond.
 
 
 
The obtained structure is''' Benzene(C6H6)'''
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| '''Slide Number 5'''
 
 
Assignment
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Here is an assignment.
 
 
Draw the structures of: 1.'''Cyclobutane''' and convert to '''Cyclobutadiene '''
 
 
2.'''Cyclopentane '''and''' '''convert to '''Cyclopentadiene'''.
 
 
 
Your completed assignment should look like this.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"|
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Next let's learn about''' Benzene derivatives.'''
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| '''Slide Number 6'''
 
 
'''Benzene Derivatives'''
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| '''Functional groups '''can substitute hydrogens in Benzene to derive various chemical compounds.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| '''Slide Number 7'''
 
 
'''Functional groups'''
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Hydrogen on the Benzene ring can be
 
 
substituted by -
 
 
Halogen atoms such as
 
 
fluoro(F ), chloro(Cl), bromo(Br ) and iodo(I )
 
 
Functional groups such as
 
 
methyl(CH3), nitro(NO2), hydroxy(OH) and others
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"|
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Let's copy and paste the '''Benzene''' structure twice on the '''Display area.'''
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Click on '''Select one or more objects''' tool >>select Benzene structure.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Click on '''Select one or more objects''' tool to select '''Benzene''' structure.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Press CTRL+C to copy >> Press CTRL+V twice to paste.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Press CTRL+C to copy and CTRL+V twice to paste the structures.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"|
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Let's Substitute '''Hydrogen''' atom of the first '''Benzene''' structure with a Fluorine('''F) '''atom'''.'''
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Press F on the keyboard.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Press''' F''' on the keyboard.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Click on '''Add or modify an atom '''tool>>Click on Hydrogen to Substitute it with F.
 
 
Point to the structure.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Click on '''Add or modify an atom '''tool.
 
 
 
Click on '''Hydrogen''' to Substitute it with Fluorine('''F).'''
 
 
The structure obtained is '''Fluorobenzene (C6H5F)'''
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"|
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Next let's Substitute hydrogen of the second '''Benzene''' with a group of atoms.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Click on '''Add or modify a group of atoms''' tool>>Click on the Hydrogen atom.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Click on '''Add or modify a group of atoms''' tool.
 
 
Click on any one of the Hydrogen atoms.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Point to enclosed Hydrogen.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Observe that '''Hydrogen''' is enclosed in a green box with a blinking cursor.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Remove '''Hydrogen''' and type capital CH and 3.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Let's substitute Hydrogen with a Methyl(CH3) group.
 
 
Remove '''Hydrogen''' and type capital CH3.
 
 
 
Click anywhere on the '''Display area.'''
 
 
 
The obtained structure is '''Methyl benzene.'''
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Click on the hydrogen of third '''Benzene''' structure.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Likewise substitute Hydrogen with a Nitro(NO2) group.
 
 
Click on one of the hydrogens of third '''Benzene''' structure.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Delete '''Hydrogen '''and type capital NO and 2 in a green box
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Remove '''Hydrogen '''and type capital NO 2.
 
 
The obtained structure is '''Nitrobenzene.'''
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"|
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Let's now see '''Carbon''' positions in the '''Benzene''' ring.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| '''Slide Number 7 '''
 
 
'''Benzene Ring Positions'''
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Six '''Carbon''' atoms are numbered from 1 to 6 in '''Benzene'''.
 
 
All six positions are equivalent before '''Hydrogen''' is substituted.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Slide Number 8
 
 
Electron Density
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Electron density of the ring changes, when Hydrogen is substituted by a '''functional group'''.
 
 
 
Electron density is dependent on the substituent.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Slide Number 9
 
 
Carbon Positions
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| A mono-substituted compound of '''Benzene '''can be substituted at positions-
 
 
 
1 & 4- as '''Para.'''
 
 
2 & 6- as '''Ortho.'''
 
 
3 & 5- as '''Meta.'''
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"|
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Let's now substitute '''Methylbenzene''' structure with another '''Methyl group. '''
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Click on '''Add or modify a group of atoms''' tool>>Click on the Hydrogen atom.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Click on '''Add or modify a group of atoms''' tool.
 
 
Click on the second Hydrogen position of the ring.
 
 
 
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Type CH3 in the green box
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Substitute Hydrogen in the green box with capital CH 3 methyl.
 
 
The new structure obtained is '''ortho-Xylene.'''
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"|
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Let's substitute''' Nitrobenzene''' with a '''Carboxylic(COOH''') group.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Click on '''Add or modify a group of atoms''' tool>>Click on the Hydrogen atom.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Click on '''Add or modify a group of atoms''' tool.
 
 
Click on the fourth Hydrogen position of the ring.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Substitute the Hydrogen in the green box with COOH
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Substitute Hydrogen in the green box with COOH Carboxylic acid group.
 
 
The new structure obtained is para-Nitrobenzoic acid.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Press CTRL+Z
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Press CTRL+Z to undo the process.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"|
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Substitute third Hydrogen position of Nitrobenzene with a nitro(NO2) group.
 
 
The new structure obtained is meta-Dinitrobenzene.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Slide Number 9
 
 
Assignment
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Here is an assignment.
 
 
Draw seven Benzene structures.
 
 
Substitute one of the Hydrogens of:
 
 
1)first Benzene with bromo(Br).
 
 
2)second Benzene with iodo(I).
 
 
3)third Benzene with hydroxy(OH).
 
 
4)fourth Benzene with amino(NH<sub>2</sub>)group.
 
 
5)fifth Benzene with ethyl(C<sub>2</sub>H<sub>5</sub>)<sub>.</sub>
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Slide Number 10
 
 
Assignment
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Also Substitute:
 
 
1)two of the hydrogens of the sixth Benzene with chlorine(Cl) atoms.
 
 
2)1 and 4 Hydrogen positions of the seventh Benzene with a carboxylic(COOH) group.
 
 
 
Your completed assignment should look like this.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"|
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Now let's learn to merge two structures.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"|
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Let's open a new window.
 
 
Ensure that current element is Carbon.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Click on the '''Add a four membered cycle''' tool>>Click on the''' Display area.'''
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Click on '''Add a four membered cycle''' tool.
 
 
Click on the '''Display area '''twice.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Click on '''Select one or more objects''' tool.
 
 
Click on the second structure.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Click on '''Select one or more objects''' tool.
 
 
 
Click on the second structure.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Drag the structure and place it close to the first structure>>Press '''CTRL+A''' to select structures.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Drag it and place it close to the first structure such that they touch each other.
 
 
Press '''CTRL+A '''to select the structures.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Point to the tool
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| '''Merge two molecules''' tool becomes active.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| Click on Merge two molecules tool to merge the molecules.
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Click on '''Merge two molecules''' tool to merge the molecules.
 
 
Drag the structure to observe merging.
 
 
<nowiki><pause></nowiki>
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"|
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Let's summarize what we have learnt.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| '''Slide Number 11'''
 
 
Summary
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| In this tutorial we have learnt to,
 
 
# Convert Cyclohexane to Cyclohexene
 
# Convert Cyclohexene to Benzene
 
# Substitute Hydrogen of Benzene ring with F
 
# Substitute Hydrogen of Benzene ring with CH_3, NO_2 and COOH groups.
 
# Merge two four membered cycles
 
 
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| '''Slide Number 12'''
 
 
Assignment
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Here is an assignment
 
 
Merge
 
 
Two Benzene molecules
 
 
Two Pentane structures
 
 
Cyclopentane and Cyclohexane molecules.
 
 
 
Your completed assignment should look like this.
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| '''Slide Number 13'''
 
 
'''Acknowledgement '''
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Watch the video available at this URL.
 
 
[http://spoken-tutorial.org/What http://spoken-tutorial.org/What]_is_a_Spoken_ Tutorial
 
 
It summarizes the Spoken Tutorial project
 
 
If you do not have good bandwidth, you can download and watch it
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| '''Slide Number 14'''
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| The Spoken Tutorial Project Team:
 
 
Conducts workshops using spoken tutorials
 
 
Gives certificates to those who pass an on-line test
 
 
For more details, please write to
 
 
'''contact@spoken-tutorial.org '''
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"| '''Slide number 15'''
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| Spoken Tutorial Project is a part of the Talk to a Teacher project
 
 
It is supported by the National Mission on Education through ICT, MHRD, Government of India
 
 
More information on this Mission is available at this link [http://spoken-tutorial.org/NMEICT-Intro http://spoken-tutorial.org/NMEICT-Intro]]
 
 
|-
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:none;padding:0.097cm;"|
 
| style="background-color:#ffffff;border-top:none;border-bottom:1pt solid #000000;border-left:1pt solid #000000;border-right:1pt solid #000000;padding:0.097cm;"| This is Madhuri Ganapathi from IIT Bombay signing off. Thank you for joining.
 
 
|}
 

Latest revision as of 11:51, 25 November 2013

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Madhurig