Difference between revisions of "JChemPaint/C2/Introduction-to-JChemPaint/English-timed"

From Script | Spoken-Tutorial
Jump to: navigation, search
Line 25: Line 25:
 
|-
 
|-
 
| 00:18
 
| 00:18
| We will also learn,
+
| We will also learn:
  
 
|-
 
|-
 
| 00:20
 
| 00:20
| * '''Menu bar, Tool bars''' and '''Panel''' of '''JChemPaint interface''',
+
| * '''Menu bar, Tool bars''' and '''Panel''' of '''JChemPaint interface'''  
  
 
|-
 
|-
Line 41: Line 41:
 
|-
 
|-
 
| 00:30
 
| 00:30
|  * Save the drawing with '''.mol''' extension
+
|  * Save the drawing with ''''.mol'''' extension.
  
 
|-
 
|-
 
| 00:34
 
| 00:34
| To record this tutorial I am using, '''Ubuntu Linux OS''' version 12.04  
+
| To record this tutorial, I am using: * '''Ubuntu Linux OS''' version 12.04  
  
 
|-
 
|-
 
| 00:41
 
| 00:41
| *'''Windows'''  version 7
+
| * '''Windows'''  version 7
  
 
|-
 
|-
 
| 00:43
 
| 00:43
| *'''JChemPaint''' version 3.3-1210  
+
| * '''JChemPaint''' version 3.3-1210  
  
 
|-
 
|-
 
| 00:48
 
| 00:48
| *'''FireFox Browser''' 31.0
+
| * '''FireFox Browser''' 31.0
  
 
|-
 
|-
 
| 00:52
 
| 00:52
| *'''Java''' version 7
+
| * '''Java''' version 7.
  
 
|-
 
|-
 
| 00:55
 
| 00:55
| To follow this tutorial you should haveInternet connection  
+
| To follow this tutorial, you should have:* Internet connection  
  
 
|-
 
|-
 
| 00:59
 
| 00:59
| * '''Synaptic Package Manager''' installed on your system.
+
| * '''Synaptic Package Manager''' installed on your system
  
 
|-
 
|-
 
| 01:03
 
| 01:03
| * Knowledge of '''Terminal on Ubuntu'''.
+
| * Knowledge of '''Terminal''' on Ubuntu'''  
  
 
|-
 
|-
 
| 01:06
 
| 01:06
| * Knowledge of '''Command Prompt on Windows'''.
+
| * Knowledge of '''Command Prompt''' on '''Windows'''.
  
 
|-
 
|-
 
| 01:10
 
| 01:10
| Please note to run '''JChemPaint''' you should have '''Java''' installed on your system.  
+
| Please note: to run '''JChemPaint''', you should have '''Java''' installed on your system.  
  
 
|-
 
|-
 
| 01:16
 
| 01:16
| '''Java''' can be installed on '''Ubuntu''' using '''Synaptic Package Manager'''
+
| '''Java''' can be installed on '''Ubuntu''' using '''Synaptic Package Manager'''.
  
 
|-
 
|-
Line 97: Line 97:
 
|-
 
|-
 
| 01:30
 
| 01:30
| * '''JChemPaint''' is a 2D chemical structures editor and viewer.
+
| * '''JChemPaint''' is a '''2D chemical structures editor''' and '''viewer'''.
  
 
|-
 
|-
 
| 01:35
 
| 01:35
| *It is free and open-source cross platform application developed in '''Java'''.  
+
| * It is free and open-source cross platform application developed in '''Java'''.  
  
 
|-
 
|-
 
| 01:43
 
| 01:43
| *It allows to import and export structure data in plain-text formats like '''SMILES, Molfile, CML''' and '''InChi keys'''.  
+
| * It allows to import and export '''structure data''' in plain-text formats like '''SMILES, Molfile, CML''' and '''InChi keys'''.  
  
 
|-
 
|-
Line 117: Line 117:
 
|-
 
|-
 
| 02:06
 
| 02:06
| In the address bar, type the URL  http://jchempaint.github.io/  to install '''JChemPaint''' on '''Ubuntu'''.  
+
| In the address bar, type the URL  "http://jchempaint.github.io/" to install '''JChemPaint''' on '''Ubuntu'''.  
  
 
|-
 
|-
 
| 02:21
 
| 02:21
| You will be directed to the download page of '''JChemPaint'''.
+
| You will be directed to the download page of '''JChemPaint'''.
  
 
|-
 
|-
Line 129: Line 129:
 
|-
 
|-
 
| 02:37
 
| 02:37
| Click on '" the desktop application (6.8 MB).'''
+
| Click on ''' the desktop application (6.8 MB).'''
  
 
|-
 
|-
 
| 02:42
 
| 02:42
| Save file dialog box opens, click on '''Save File''' button and Click on '''OK'''
+
| Save file dialog-box opens. click on '''Save File''' button and click on '''OK'''.
  
 
|-
 
|-
Line 141: Line 141:
 
|-
 
|-
 
| 02:53
 
| 02:53
| Right click on the saved file and select '''Move to Desktop'''.
+
| Right-click on the saved file and select '''Move to Desktop'''.
  
 
|-
 
|-
Line 153: Line 153:
 
|-
 
|-
 
| 03:10
 
| 03:10
| Type '''“cd space Desktop”''' and press '''Enter'''.
+
| Type: '''“cd space Desktop”''' and press '''Enter'''.
  
 
|-
 
|-
 
| 03:16
 
| 03:16
| Type '''java space  -jar space ./jchempaint-3.3-1210.jar''' and press '''Enter'''.
+
| Type: '''java space  -jar space ./jchempaint-3.3-1210.jar''' and press '''Enter'''.
  
 
|-
 
|-
Line 165: Line 165:
 
|-
 
|-
 
|  03:35
 
|  03:35
| Please note '''JChemPaint''' can be opened  through the '''Terminal''' only.   
+
| Please note, '''JChemPaint''' can be opened  through the '''Terminal''' only.   
  
 
|-
 
|-
Line 181: Line 181:
 
|-
 
|-
 
| 03:55
 
| 03:55
| In the address bar, type  '''jre-7-downloads''' and press '''Enter'''.
+
| In the address bar, type: '''jre-7-downloads''' and press '''Enter'''.
  
 
|-
 
|-
Line 189: Line 189:
 
|-
 
|-
 
| 04:06
 
| 04:06
| Click on the link '''Java SE Runtime Environment 7 Downloads-Oracle.'''  
+
| Click on the link '''"Java SE Runtime Environment 7 Downloads-Oracle".'''  
  
 
|-
 
|-
Line 205: Line 205:
 
|-
 
|-
 
| 04:31
 
| 04:31
|  '''Save file''' dialog box opens.  
+
|  '''Save file''' dialog-box opens.  
  
 
|-
 
|-
Line 257: Line 257:
 
|-
 
|-
 
| 05:44
 
| 05:44
| '''Save file''' dialog box opens.  
+
| '''Save file''' dialog-box opens.  
  
 
|-
 
|-
Line 265: Line 265:
 
|-
 
|-
 
| 05:51
 
| 05:51
| The '''.jar''' file will be downloaded to '''Downloads''' folder.
+
| The ''''.jar'''' file will be downloaded to '''Downloads''' folder.
  
 
|-
 
|-
 
| 05:57
 
| 05:57
| Open '''Downloads''' folder and select the file '''jchempaint-3.3-1210.jar.'''  
+
| Open '''Downloads''' folder and select the file ''''jchempaint-3.3-1210.jar'.'''  
  
 
|-
 
|-
Line 277: Line 277:
 
|-
 
|-
 
| 06:13
 
| 06:13
| Right click on the executable file.  
+
| Right-click on the executable file.  
  
 
|-
 
|-
Line 297: Line 297:
 
|-
 
|-
 
| 06:37
 
| 06:37
| In the '''Open box''' type '''“cmd”''' and click on '''OK'''.
+
| In the '''Open box''', type: '''“cmd”''' and click on '''OK'''.
  
 
|-
 
|-
Line 305: Line 305:
 
|-
 
|-
 
| 06:46
 
| 06:46
| Let's go to '''Downloads''' folder where we have save our downloaded  '''.jar''' file.  
+
| Let's go to '''Downloads''' folder where we have saved our downloaded  ''''.jar'''' file.  
  
 
|-
 
|-
 
| 06:54
 
| 06:54
| Type at the '''prompt “cd space Downloads”''' and press '''Enter'''.   
+
| Type at the '''prompt: “cd space Downloads”''' and press '''Enter'''.   
  
 
|-
 
|-
 
| 07:00
 
| 07:00
| Type '''java space -jar space jchempaint-3.3-1210.jar''' and press '''Enter'''.
+
| Type: '''java space -jar space jchempaint-3.3-1210.jar''' and press '''Enter'''.
  
 
|-
 
|-
Line 325: Line 325:
 
|-
 
|-
 
| 07:20
 
| 07:20
| *Go to '''Program files''' locate the '''java''' folder and click on it.
+
| * Go to '''Program files''', locate the '''java''' folder and click on it.
  
 
|-
 
|-
 
| 07:27
 
| 07:27
| *Locate '''bin''' folder and right-click on it.
+
| * Locate '''bin''' folder and right-click on it.
  
 
|-
 
|-
 
| 07:32
 
| 07:32
| *Navigate to '''Properties'''.
+
| * Navigate to '''Properties'''.
  
 
|-
 
|-
 
| 07:35
 
| 07:35
| *Copy the address '''C:\Program Files''' within brackets '''(x86)\Java\jre7.'''
+
| * Copy the address '''C:\Program Files''' within brackets '''(x86)\Java\jre7.'''
  
 
|-
 
|-
 
| 07:48
 
| 07:48
| To set the path follow the steps.
+
| To set the path, follow the steps.
  
 
|-
 
|-
 
| 07:51
 
| 07:51
| *Right-click on '''My Computer''', select '''Properties''' option.  
+
| * Right-click on '''My Computer''', select '''Properties''' option.  
  
 
|-
 
|-
 
| 07:57
 
| 07:57
| *Click on '''Advanced System settings''', and then click on '''Environment  Variables.'''  
+
| * Click on '''Advanced System settings''' and then click on '''Environment  Variables.'''  
  
 
|-
 
|-
 
| 08:04
 
| 08:04
| *In '''System Variables''' search for '''Path'''.
+
| * In '''System Variables''', search for '''Path'''.
  
 
|-
 
|-
 
| 08:09
 
| 08:09
| *Click on '''Edit'''.
+
| * Click on '''Edit'''.
  
 
|-
 
|-
 
| 08:11
 
| 08:11
| *'''Edit system  Variable''' dialog box opens
+
| * '''Edit system  Variable''' dialog-box opens.
  
 
|-
 
|-
 
| 08:16
 
| 08:16
| *Paste the address  '''C:\Program Files''' within brackets '''(x86)\Java\jre7.'''
+
| * '''Paste''' the address  '''C:\Program Files''' within brackets '''(x86)\Java\jre7.'''
  
 
|-
 
|-
 
| 08:28
 
| 08:28
| *Click on '''OK ''' and close the windows.
+
| * Click on '''OK ''' and close the windows.
  
 
|-
 
|-
Line 377: Line 377:
 
|-
 
|-
 
| 08:36
 
| 08:36
| This the '''Menu bar'''.
+
| This is the '''Menu bar'''.
  
 
|-
 
|-
Line 389: Line 389:
 
|-
 
|-
 
| 09:02
 
| 09:02
| '''JChempaint''' window has,
+
| '''JChempaint''' window has-
  
 
|-
 
|-
 
| 09:04
 
| 09:04
| *Formatting tools on top
+
| * Formatting tools on top
  
 
|-
 
|-
 
| 09:07
 
| 09:07
| *Bond tools on the left
+
| * '''Bond''' tools on the left
  
 
|-
 
|-
 
| 09:09
 
| 09:09
| *Ring tools on the right and
+
| * '''Ring''' tools on the right and
 
   
 
   
 
|-
 
|-
 
| 09:12
 
| 09:12
| *Element tools at the bottom
+
| * Element tools at the bottom
  
 
|-
 
|-
Line 421: Line 421:
 
|-
 
|-
 
| 09:24
 
| 09:24
| Click and drag the '''chain'''  to '''6 Carbon atoms''' on the '''Panel'''.
+
| Click and drag the '''chain'''  to 6 Carbon atoms on the '''Panel'''.
  
 
|-
 
|-
 
| 09:30
 
| 09:30
| Notice that '''Carbon chain''' does not contain any '''atoms'''.
+
| Notice that '''Carbon chain''' does not contain any atoms.
  
 
|-
 
|-
Line 441: Line 441:
 
|-
 
|-
 
| 09:54
 
| 09:54
| By default '''Display Preferences''' tab is selected.
+
| By default, '''Display Preferences''' tab is selected.
  
 
|-
 
|-
 
| 10:00
 
| 10:00
| Notice that none of  the check boxes are selected.
+
| Notice that none of  the check-boxes are selected.
  
 
|-
 
|-
 
| 10:05
 
| 10:05
| Let's click on a few check boxes and see how they are useful.
+
| Let's click on a few check-boxes and see how they are useful.
  
 
|-
 
|-
 
|10:12
 
|10:12
| To show '''Methyl groups''' on the '''chain''' click on '''Show explicit methyl groups.'''
+
| To show '''Methyl groups''' on the '''chain''', click on '''Show explicit methyl groups.'''
  
 
|-
 
|-
 
| 10:18
 
| 10:18
| To show '''hydrogens''' click on '''Show implicit hydrogens.'''
+
| To show '''hydrogens''', click on '''Show implicit hydrogens.'''
  
 
|-
 
|-
Line 465: Line 465:
 
|-
 
|-
 
| 10:29
 
| 10:29
| As an example let's draw '''Phosphoric acid(H3PO4)'''.
+
| As an example, let's draw '''Phosphoric acid(H3PO4)'''.
  
 
|-
 
|-
Line 473: Line 473:
 
|-
 
|-
 
| 10:42
 
| 10:42
| '''Phosphine(PH3)''' will be displayed
+
| '''Phosphine(PH3)''' will be displayed.
  
 
|-
 
|-
Line 489: Line 489:
 
|-
 
|-
 
| 11:02
 
| 11:02
| You will notice a red line below '''Phosphrous atom'''.
+
| You will notice a red line, below '''Phosphrous atom'''.
  
 
|-
 
|-
Line 497: Line 497:
 
|-
 
|-
 
| 11:11
 
| 11:11
| To complete the '''valency''' let's make the top '''Phosphrous-hydroxy bond''' as a '''double bond'''.  
+
| To complete the '''valency''', let's make the top '''Phosphrous-hydroxy bond''' as a '''double bond'''.  
  
 
|-
 
|-
Line 525: Line 525:
 
|-
 
|-
 
| 11:44
 
| 11:44
|  In the window click on '''Color atoms by element''' check box.
+
|  In the window, click on '''Color atoms by element''' check-box.
  
 
|-
 
|-
Line 549: Line 549:
 
|-
 
|-
 
| 12:12
 
| 12:12
| '''Save as''' dialog box opens.
+
| '''Save as''' dialog-box opens.
  
 
|-
 
|-
Line 561: Line 561:
 
|-
 
|-
 
| 12:27
 
| 12:27
| The file will be saved with '''.mol''' extension.
+
| The file will be saved with ''''.mol'''' extension.
  
 
|-
 
|-
 
| 12:31
 
| 12:31
| Let's summarise,
+
| Let's summarize.
  
 
|-
 
|-
 
| 12:33
 
| 12:33
| In this tutorial, we have learnt  
+
| In this tutorial, we have learnt:
  
 
|-
 
|-
Line 597: Line 597:
 
|-
 
|-
 
| 12:58
 
| 12:58
| * Save the drawing with '''.mol''' extension
+
| * Save the drawing with ''''.mol'''' extension.
  
 
|-
 
|-
 
| 13:02
 
| 13:02
|  As an assignment
+
|  As an assignment-
  
 
|-
 
|-
Line 613: Line 613:
 
|-
 
|-
 
| 13:09
 
| 13:09
| This video summarises the Spoken Tutorial project
+
| This video summarizes the '''Spoken Tutorial''' project.
  
 
|-
 
|-
Line 621: Line 621:
 
|-
 
|-
 
| 13:18
 
| 13:18
| The Spoken Tutorial  Team: Conducts workshops using spoken tutorials
+
| The Spoken Tutorial  Team: * Conducts workshops using spoken tutorials.
  
 
|-
 
|-
 
| 13:22
 
| 13:22
| Gives certificates to those who pass an online test  
+
|* Gives certificates to those who pass an online test.
  
 
|-
 
|-
 
| 13:27
 
| 13:27
| For more details, please write to contact@spoken-tutorial.org  
+
| For more details, please write to:
 +
contact@spoken-tutorial.org  
  
 
|-
 
|-
 
| 13:34
 
| 13:34
| Spoken Tutorial Project is a part of the Talk to a Teacher project  
+
| '''Spoken Tutorial''' project is a part of the '''Talk to a Teacher''' project.
  
 
|-
 
|-
 
| 13:39
 
| 13:39
| It is supported by the National Mission on Education through ICT, MHRD, Government of India
+
| It is supported by the National Mission on Education through ICT, MHRD, Government of India.
  
 
|-
 
|-
 
| 13:46
 
| 13:46
| More information on this Mission is available at http://spoken-tutorial.org/NMEICT-Intro ]
+
| More information on this mission is available at:
 +
http://spoken-tutorial.org/NMEICT-Intro
  
 
|-
 
|-
 
| 13:52
 
| 13:52
| This is Madhuri Ganpathi from IIT Bombay signing off. Thank you for joining.  
+
| This is Madhuri Ganpathi from '''IIT Bombay''', signing off. Thank you for joining.  
  
 
|-
 
|-
 
|}
 
|}

Revision as of 10:48, 5 December 2015

Time Narration
00:00 Hello everyone. Welcome to this tutorial on Introduction to JChemPaint.
00:06 In this tutorial, we will learn:
00:08 * About JChemPaint
00:10 * Install JChemPaint on Windows Operating system
00:13 * Install JChemPaint on Ubuntu OS 12.04.
00:18 We will also learn:
00:20 * Menu bar, Tool bars and Panel of JChemPaint interface
00:25 *Preferences window
00:27 * Draw structures using tools and
00:30 * Save the drawing with '.mol' extension.
00:34 To record this tutorial, I am using: * Ubuntu Linux OS version 12.04
00:41 * Windows version 7
00:43 * JChemPaint version 3.3-1210
00:48 * FireFox Browser 31.0
00:52 * Java version 7.
00:55 To follow this tutorial, you should have:* Internet connection
00:59 * Synaptic Package Manager installed on your system
01:03 * Knowledge of Terminal on Ubuntu
01:06 * Knowledge of Command Prompt on Windows.
01:10 Please note: to run JChemPaint, you should have Java installed on your system.
01:16 Java can be installed on Ubuntu using Synaptic Package Manager.
01:21 For example: openjdk-7-jre
01:27 Let's learn about JChemPaint.
01:30 * JChemPaint is a 2D chemical structures editor and viewer.
01:35 * It is free and open-source cross platform application developed in Java.
01:43 * It allows to import and export structure data in plain-text formats like SMILES, Molfile, CML and InChi keys.
01:56 Let's start with JChemPaint installation on Ubuntu 12.04 OS.
02:02 Open Firefox web browser.
02:06 In the address bar, type the URL "http://jchempaint.github.io/" to install JChemPaint on Ubuntu.
02:21 You will be directed to the download page of JChemPaint.
02:26 On the webpage, locate “download a recent jar file from github (current is 3.3-1210):”
02:37 Click on the desktop application (6.8 MB).
02:42 Save file dialog-box opens. click on Save File button and click on OK.
02:48 Let's move the saved file from Downloads folder to Desktop.
02:53 Right-click on the saved file and select Move to Desktop.
03:00 To open a new JChemPaint window, we need Terminal.
03:04 Press CTRl+Alt and T keys simultaneously to open the Terminal.
03:10 Type: “cd space Desktop” and press Enter.
03:16 Type: java space -jar space ./jchempaint-3.3-1210.jar and press Enter.
03:32 JChemPaint window opens.
03:35 Please note, JChemPaint can be opened through the Terminal only.
03:41 Let's move on to Windows installation process.
03:45 Let's install Java on Windows OS.
03:50 Open Firefox web browser on your Windows machine.
03:55 In the address bar, type: jre-7-downloads and press Enter.
04:02 A new webpage opens.
04:06 Click on the link "Java SE Runtime Environment 7 Downloads-Oracle".
04:14 Download page opens.
04:17 On the web page, accept the License agreement.
04:22 Select jre-7-windows-i586.exe link.
04:31 Save file dialog-box opens.
04:35 Click on Save File button.
04:38 The file will be downloaded into the Downloads folder.
04:42 Click on the downloaded file.
04:46 Follow the installation process to install Java.
04:51 Click on Close.
04:54 Jre-7 will be installed on your machine.
04:59 Let's install JChemPaint.
05:02 Open Firefox web browser on your Windows machine.
05:06 In the address bar, type the URL http://jchempaint.github.io/ to install JChemPaint on Windows.
05:21 You will be directed to the download page of JChemPaint.
05:26 On the webpage, locate “download a recent jar file from github (current is 3.3-1210):”
05:39 Click on "the desktop application (6.8 MB) ".
05:44 Save file dialog-box opens.
05:47 Click on Save File button.
05:51 The '.jar' file will be downloaded to Downloads folder.
05:57 Open Downloads folder and select the file 'jchempaint-3.3-1210.jar'.
06:08 You can download available latest version.
06:13 Right-click on the executable file.
06:16 Select Open to open JChemPaint.
06:20 Alternately, you can open JChemPaint using Command prompt.
06:26 To open Command prompt, press Windows and R keys simultaneously on the keyboard.
06:34 Run prompt box opens.
06:37 In the Open box, type: “cmd” and click on OK.
06:43 Command prompt opens.
06:46 Let's go to Downloads folder where we have saved our downloaded '.jar' file.
06:54 Type at the prompt: “cd space Downloads” and press Enter.
07:00 Type: java space -jar space jchempaint-3.3-1210.jar and press Enter.
07:13 JChemPaint window opens.
07:17 If an error appears on command prompt,
07:20 * Go to Program files, locate the java folder and click on it.
07:27 * Locate bin folder and right-click on it.
07:32 * Navigate to Properties.
07:35 * Copy the address C:\Program Files within brackets (x86)\Java\jre7.
07:48 To set the path, follow the steps.
07:51 * Right-click on My Computer, select Properties option.
07:57 * Click on Advanced System settings and then click on Environment Variables.
08:04 * In System Variables, search for Path.
08:09 * Click on Edit.
08:11 * Edit system Variable dialog-box opens.
08:16 * Paste the address C:\Program Files within brackets (x86)\Java\jre7.
08:28 * Click on OK and close the windows.
08:32 JChemPaint window looks like this.
08:36 This is the Menu bar.
08:38 Menu bar contains menu items like: File, Edit, View, Atom, Bond, Tools, R-groups, Templates and Help.
08:54 Tool bars contain all the tools required for you to work with JChemPaint.
09:02 JChempaint window has-
09:04 * Formatting tools on top
09:07 * Bond tools on the left
09:09 * Ring tools on the right and
09:12 * Element tools at the bottom
09:15 Panel displays the drawn structures.
09:18 Now to JChemPaint Preferences window.
09:22 Click on Draw a chain tool.
09:24 Click and drag the chain to 6 Carbon atoms on the Panel.
09:30 Notice that Carbon chain does not contain any atoms.
09:35 Go to Edit menu, navigate to Preferences and click on it.
09:42 Preferences window opens.
09:45 Preferences window has two tabs Display Preferences and Other Preferences.
09:54 By default, Display Preferences tab is selected.
10:00 Notice that none of the check-boxes are selected.
10:05 Let's click on a few check-boxes and see how they are useful.
10:12 To show Methyl groups on the chain, click on Show explicit methyl groups.
10:18 To show hydrogens, click on Show implicit hydrogens.
10:23 Click on Apply and OK buttons to apply the changes.
10:29 As an example, let's draw Phosphoric acid(H3PO4).
10:35 To draw, click on Phosphrous(P) tool and then click on the Panel.
10:42 Phosphine(PH3) will be displayed.
10:46 Click on Oxygen(O) tool and then click on Single bond tool.
10:51 Place the cursor on P; a small 'blue' colored circle appears on it.
10:57 Click on P and drag to draw four Hydroxy bonds.
11:02 You will notice a red line, below Phosphrous atom.
11:07 This indicates that valency is not complete.
11:11 To complete the valency, let's make the top Phosphrous-hydroxy bond as a double bond.
11:19 Click on double bond tool.
11:21 Click on top Phosphrous-hydroxy bond.
11:26 The obtained structure is Phosphoric acid.
11:30 Notice that all the atoms in the structure are black colored.
11:36 To show Rasmol color of the element,
11:39 Go to Edit menu and navigate to Preferences.
11:44 In the window, click on Color atoms by element check-box.
11:50 It shows Rasmol color of the element.
11:55 Click on Apply and OK buttons to apply the changes.
12:00 Note that elements appear with their Rasmol colors.
12:05 Let's save the file.
12:07 Click on File menu and select Save as.
12:12 Save as dialog-box opens.
12:15 Select Desktop folder to save the file on Desktop.
12:21 Type the file name as Phosphoric acid and click on Save button.
12:27 The file will be saved with '.mol' extension.
12:31 Let's summarize.
12:33 In this tutorial, we have learnt:
12:36 * About JChemPaint
12:38 * Install JChemPaint on Windows Operating System
12:42 * Install JChemPaint on Ubuntu Operating system 12.04
12:47 * Menu bar, Tool bars and Panel of JChemPaint interface
12:52 * Preferences window
12:55 * Draw structures using tools and
12:58 * Save the drawing with '.mol' extension.
13:02 As an assignment-
13:04 * Install JChemPaint.
13:06 * Explore various menu items.
13:09 This video summarizes the Spoken Tutorial project.
13:12 If you do not have good bandwidth, you can download and watch it.
13:18 The Spoken Tutorial Team: * Conducts workshops using spoken tutorials.
13:22 * Gives certificates to those who pass an online test.
13:27 For more details, please write to:

contact@spoken-tutorial.org

13:34 Spoken Tutorial project is a part of the Talk to a Teacher project.
13:39 It is supported by the National Mission on Education through ICT, MHRD, Government of India.
13:46 More information on this mission is available at:

http://spoken-tutorial.org/NMEICT-Intro

13:52 This is Madhuri Ganpathi from IIT Bombay, signing off. Thank you for joining.

Contributors and Content Editors

PoojaMoolya, Ranjana, Sandhya.np14