Difference between revisions of "GChemPaint/C3/Resonance-Structures/English"
Line 47: | Line 47: | ||
||Switch to '''GChemPaint''' window. | ||Switch to '''GChemPaint''' window. | ||
||I will switch to '''GChemPaint''' window. | ||I will switch to '''GChemPaint''' window. | ||
+ | |||
+ | I have opened a new GChemPaint window. | ||
Here you can see '''EthylChloride''' and ''' Methylbromide''' structures. | Here you can see '''EthylChloride''' and ''' Methylbromide''' structures. | ||
Line 73: | Line 75: | ||
||Click on ''' End arrow at center of new bond''' check box. | ||Click on ''' End arrow at center of new bond''' check box. | ||
||Click on '''End arrow at center of new bond''' check box. | ||Click on '''End arrow at center of new bond''' check box. | ||
+ | |||
+ | It moves the electron pair to the correct position. | ||
|- | |- | ||
||Click on Carbon-Chlorine bond. | ||Click on Carbon-Chlorine bond. | ||
||Click on Carbon-Chlorine bond. | ||Click on Carbon-Chlorine bond. | ||
− | |||
− | |||
|- | |- | ||
||Point to the shift. | ||Point to the shift. | ||
Line 83: | Line 85: | ||
|- | |- | ||
||Point to the structure. | ||Point to the structure. | ||
− | ||I will the copy of | + | ||I will make the copy of this structure. |
|- | |- | ||
||Click on Add on arrow >>click between the structures. | ||Click on Add on arrow >>click between the structures. | ||
Line 92: | Line 94: | ||
|- | |- | ||
||Click on '''Add or modify a group of atoms''' tool >> click above the arrow. | ||Click on '''Add or modify a group of atoms''' tool >> click above the arrow. | ||
− | ||Click on '''Add or modify a group of atoms''' tool | + | ||Click on '''Add or modify a group of atoms''' tool, click above the arrow. |
|- | |- | ||
||Type '''NaOH''' in the green box. | ||Type '''NaOH''' in the green box. | ||
− | ||Type '''NaOH''' | + | ||Type '''NaOH'''. |
|- | |- | ||
||Click on '''Selection''' tool>>Click on the text Base to select>>Right-click click on the arrow. | ||Click on '''Selection''' tool>>Click on the text Base to select>>Right-click click on the arrow. | ||
Line 103: | Line 105: | ||
|- | |- | ||
||Point to the submenu. | ||Point to the submenu. | ||
+ | |||
Select '''Arrow''' >>click on '''Attach selection to arrow'''. | Select '''Arrow''' >>click on '''Attach selection to arrow'''. | ||
||In the submenu, select '''Arrow'''. | ||In the submenu, select '''Arrow'''. | ||
Line 109: | Line 112: | ||
|- | |- | ||
||Point to the dialogue box. | ||Point to the dialogue box. | ||
− | || | + | ||A dialogue box with heading '''Arrow associated''' appears. |
− | A dialogue box with heading '''Arrow associated''' appears. | + | |
|- | |- | ||
||Point to drop down. | ||Point to drop down. | ||
− | ||In Role drop-down, select “Reactant” and click on Close. <PAUSE> | + | ||In the '''Role''' drop-down, select “Reactant” and click on Close. <PAUSE> |
|- | |- | ||
|| | || | ||
Line 130: | Line 132: | ||
||Click on '''Increment the charge''' tool>>Click at the position from where Carbon-chlorine bond to deleted. | ||Click on '''Increment the charge''' tool>>Click at the position from where Carbon-chlorine bond to deleted. | ||
||Click on '''Increment the charge''' tool. | ||Click on '''Increment the charge''' tool. | ||
+ | |||
Click at the position from where '''Carbon-chlorine''' bond was deleted. | Click at the position from where '''Carbon-chlorine''' bond was deleted. | ||
− | '''Ethyl Carbo-cation(CH3-CH2+)''' is formed. | + | '''Ethyl Carbo-cation(CH3-CH2^+)''' is formed. |
|- | |- | ||
||Click on '''Decrement the charge''' tool>>click on '''HCl'''. | ||Click on '''Decrement the charge''' tool>>click on '''HCl'''. | ||
||To form Chloride ion, click on '''Decrement the charge''' tool. | ||To form Chloride ion, click on '''Decrement the charge''' tool. | ||
Click on '''HCl'''. | Click on '''HCl'''. | ||
− | '''Chloride(Cl-)''' ion is formed. | + | '''Chloride(Cl^-)''' ion is formed. |
<PAUSE> | <PAUSE> | ||
|- | |- | ||
Line 157: | Line 160: | ||
||One curved arrow moves to '''bromo(Br)''' and other moves towards '''methyl(CH3)'''. | ||One curved arrow moves to '''bromo(Br)''' and other moves towards '''methyl(CH3)'''. | ||
− | Both '''Bromo(Br)''' and '''methyl(CH3)''' will get one electron each from the bonded pair. | + | Both '''Bromo(Br)''' and '''methyl(CH3)''' will get one electron each from the bonded pair of electrons. |
|- | |- | ||
||Point to the arrow. | ||Point to the arrow. | ||
||To show the products, let's add an arrow. | ||To show the products, let's add an arrow. | ||
− | Click on '''Add an arrow''', click on '''Display area'''. | + | Click on '''Add an arrow''', click on '''Display area''' beside '''Methylbromide'''. |
|- | |- | ||
||Point to the '''free radicals'''. | ||Point to the '''free radicals'''. | ||
Line 191: | Line 194: | ||
|- | |- | ||
||Point to the dialogue box. | ||Point to the dialogue box. | ||
− | || | + | ||A dialogue box with heading '''Arrow associated''' appears. |
− | A dialogue box with heading '''Arrow associated''' appears. | + | |
|- | |- | ||
||Point to drop down. | ||Point to drop down. | ||
Line 200: | Line 202: | ||
Select “Temperature”>>Click on Close. | Select “Temperature”>>Click on Close. | ||
− | ||In the '''Role''' drop-down, select “Temperature” and click on '''Close''' | + | ||In the '''Role''' drop-down, select “Temperature” and |
− | + | ||
− | + | click on '''Close'''. | |
− | + | ||
|- | |- | ||
|| | || | ||
||Now let's create the '''free radicals'''. | ||Now let's create the '''free radicals'''. | ||
+ | |- | ||
+ | ||Point to the structure. | ||
+ | ||I will copy the structure. | ||
|- | |- | ||
||Click on '''Eraser''' tool and click on '''Carbon-bromine''' bond. | ||Click on '''Eraser''' tool and click on '''Carbon-bromine''' bond. | ||
Line 212: | Line 216: | ||
Point to '''CH4''' and''' HBr'''. | Point to '''CH4''' and''' HBr'''. | ||
||Click on '''Eraser''' tool and click on '''Carbon-bromine''' bond. | ||Click on '''Eraser''' tool and click on '''Carbon-bromine''' bond. | ||
+ | |||
'''Methane(CH4)''' and '''Hydrogen-bromide(HBr)''' are formed. | '''Methane(CH4)''' and '''Hydrogen-bromide(HBr)''' are formed. | ||
|- | |- | ||
− | ||Click on '''Add an | + | ||Click on '''Add an unpaired electron''' tool. |
Click on '''CH4''' and '''HBr'''. | Click on '''CH4''' and '''HBr'''. | ||
− | ||Click on '''Add an | + | ||Click on '''Add an unpaired''' electron tool. |
+ | |||
Click on '''Methane(CH4)''' and '''Hydrogen-bromide(HBr)''' | Click on '''Methane(CH4)''' and '''Hydrogen-bromide(HBr)''' | ||
+ | |||
'''Methyl(CH3)''' and '''Bromium(Br) free radicals''' are formed. | '''Methyl(CH3)''' and '''Bromium(Br) free radicals''' are formed. | ||
− | |||
− | |||
− | |||
|- | |- | ||
||Click on '''Selection''' tool. | ||Click on '''Selection''' tool. | ||
Line 235: | Line 239: | ||
Point to the Submenu. | Point to the Submenu. | ||
||Now, right-click on the selection. | ||Now, right-click on the selection. | ||
+ | |||
A submenu opens. | A submenu opens. | ||
|- | |- | ||
Line 253: | Line 258: | ||
||We can also remove the reaction pathway, if we want to. | ||We can also remove the reaction pathway, if we want to. | ||
− | To do so, right-click on the reaction again and click on '''Destroy the reaction'''. | + | To do so, right-click on the reaction again and |
+ | |||
+ | click on '''Destroy the reaction'''. | ||
|- | |- | ||
||Point to the reactants and products. | ||Point to the reactants and products. | ||
Line 263: | Line 270: | ||
|- | |- | ||
|| | || | ||
− | ||Now we move on to Resonance or | + | ||Now we move on to Resonance or Mesomery using '''double headed arrow'''. |
|- | |- | ||
||Switch to '''GChempaint'''. | ||Switch to '''GChempaint'''. | ||
Line 276: | Line 283: | ||
||Now let's add a double headed arrow. | ||Now let's add a double headed arrow. | ||
|- | |- | ||
− | ||Click on Add a double headed arrow. | + | ||Click on '''Add a double headed arrow'''. |
Click on '''Display area''' beside '''Nitromethane'''. | Click on '''Display area''' beside '''Nitromethane'''. | ||
− | ||Click on Add a double headed arrow. | + | ||Click on '''Add a double headed arrow'''. |
− | Click on '''Display area''' in between Nitromethanes. | + | Click on '''Display area''' in between '''Nitromethanes'''. |
|- | |- | ||
||Point to the structures | ||Point to the structures | ||
− | ||The two structures are | + | ||The two structures are "Resonance structures" of '''Nitromethane'''.. |
|- | |- | ||
||Press CTRL+A to select the structures. | ||Press CTRL+A to select the structures. | ||
Line 297: | Line 304: | ||
A submenu opens. | A submenu opens. | ||
|- | |- | ||
− | ||Click on Create a new mesomery relationship | + | ||Click on '''Create a new mesomery relationship''' |
− | ||Click on Create a new mesomery relationship. | + | ||Click on '''Create a new mesomery relationship'''. |
Drag to see the relationship. | Drag to see the relationship. | ||
|- | |- | ||
− | ||Slide Number | + | ||'''Slide Number''' |
− | Resonance structures of Benzene | + | |
− | ||Here is slide for resonance structures of Benzene. | + | '''Resonance structures of Benzene''' |
+ | ||Here is slide for resonance structures of ''' Benzene'''. | ||
|- | |- | ||
|| | || | ||
− | ||Now, let's learn to create a retro-synthetic pathway. | + | ||Now, let's learn to create a '''retro-synthetic''' pathway. |
|- | |- | ||
||Point to the window. | ||Point to the window. | ||
Line 314: | Line 322: | ||
||Point to the final product intermediates and starting material. | ||Point to the final product intermediates and starting material. | ||
||Retrosynthetic pathway | ||Retrosynthetic pathway | ||
− | starts with the product | + | |
− | and goes to the reactant | + | * starts with the product |
− | along with all the intermediates. | + | |
+ | * and goes to the reactant | ||
+ | |||
+ | * along with all the intermediates. | ||
|- | |- | ||
||Point to the structures | ||Point to the structures | ||
− | ||In this pathway, the final product is | + | ||In this pathway, the final product is '''Ortho-nitrophenol''' and the starting material is '''Benzene'''. |
|- | |- | ||
|| | || | ||
− | || | + | ||Let's add a retro-synthetic arrow, to show the retro-synthetic pathway. |
− | Let's add a retro-synthetic arrow, to show the retro-synthetic pathway. | + | |
|- | |- | ||
||Click on Add arrow for a retrosynthetic step >> Click in between all the compounds. | ||Click on Add arrow for a retrosynthetic step >> Click in between all the compounds. | ||
||Click on Add arrow for a retrosynthetic step. | ||Click on Add arrow for a retrosynthetic step. | ||
− | Click | + | |
+ | Click between all the compounds. | ||
|- | |- | ||
||Press CTRL+A select all structures. | ||Press CTRL+A select all structures. | ||
+ | |||
Right click on the selection. | Right click on the selection. | ||
||Press CTRL+A select all structures. | ||Press CTRL+A select all structures. | ||
+ | |||
Right click on the selection. | Right click on the selection. | ||
|- | |- | ||
||Point to Submenu. | ||Point to Submenu. | ||
+ | |||
Click on Create a new retrosynthesis pathway. | Click on Create a new retrosynthesis pathway. | ||
||A sub-menu opens. | ||A sub-menu opens. | ||
+ | |||
Click on Create a new retrosynthesis pathway. | Click on Create a new retrosynthesis pathway. | ||
+ | |||
Drag to see the created pathway. | Drag to see the created pathway. | ||
|- | |- | ||
Line 344: | Line 360: | ||
|- | |- | ||
||Slide Number 9 | ||Slide Number 9 | ||
+ | |||
Summary | Summary | ||
||In this tutorial we have learnt to | ||In this tutorial we have learnt to | ||
− | Show electron shifts using curved arrows | + | |
− | Attach reaction conditions to reaction arrows. | + | * Show electron shifts using curved arrows |
− | Create and destroy reaction pathway using a reaction arrow | + | |
− | Create a new mesomery relationship using double headed arrow | + | * Attach reaction conditions to reaction arrows. |
− | Create a retro-synthetic pathway using the retro-synthetic arrow. | + | |
+ | * Create and destroy reaction pathway using a reaction arrow | ||
+ | |||
+ | * Create a new mesomery relationship using double headed arrow | ||
+ | |||
+ | * Create a retro-synthetic pathway using the retro-synthetic arrow. | ||
|- | |- | ||
||Slide Number 10 | ||Slide Number 10 | ||
+ | |||
Assignment | Assignment | ||
||As an assignment | ||As an assignment | ||
+ | |||
Using arrow properties | Using arrow properties | ||
+ | |||
1. Create a reaction pathway for the reaction between Bromo-Ethane (C2H5Br) and Sodium(Na) with Dry ether as a solvent to obtain Butane(C4H10) and Sodium bromide(NaBr). | 1. Create a reaction pathway for the reaction between Bromo-Ethane (C2H5Br) and Sodium(Na) with Dry ether as a solvent to obtain Butane(C4H10) and Sodium bromide(NaBr). | ||
+ | |||
2. Add stoichiometric coefficients to the reactants and products. | 2. Add stoichiometric coefficients to the reactants and products. | ||
+ | |||
3. Draw resonance structures of Naphtalene, Anthracene and Carbondioxide | 3. Draw resonance structures of Naphtalene, Anthracene and Carbondioxide | ||
|- | |- | ||
||Point to the reaction pathway. | ||Point to the reaction pathway. | ||
+ | |||
Point to the resonance structures | Point to the resonance structures | ||
− | || | + | ||This is the required reaction pathway. |
− | This is the required reaction pathway. | + | |
− | These are the resonance structures of | + | These are the resonance structures of '''Naphthalene''', '''Anthracene''' and '''Carbon-dioxide'''. |
|- | |- | ||
||'''Slide Number 10''' | ||'''Slide Number 10''' |
Revision as of 15:56, 13 May 2014
Title of the tutorial: Resonance Structures
Author: Madhuri Ganapathi
Key words: Show Electron shift and Resonance Structures, Create a reaction pathway, Create a mesomeric pathway, Build Retrosynthetic Pathway, Video tutorial.
Visual Cue | Narration
|
---|---|
Slide Number 1
Title Slide |
Hello everyone.
Welcome to this tutorial on Resonance Structures in GChemPaint. |
Slide Number 2
Learning Objectives |
In this tutorial, we will learn to,
|
Slide Number 3
System Requirement |
For this tutorial I am using
Ubuntu Linux OS version 12.04. GChemPaint version 0.12.10. |
Slide Number 4
Pre-requisites |
To follow this tutorial you should be familiar with GChemPaint.
If not, for relevant tutorials, please visit our website. |
Switch to GChemPaint window. | I will switch to GChemPaint window.
I have opened a new GChemPaint window. Here you can see EthylChloride and Methylbromide structures. |
I will show how to obtain a Carbo-cation. | |
Point to Chlorine atom. | Let's add a pair of electrons on the Chlorine atom of EthylChloride. |
Click on Add an electron pair tool>>Click on Chlorine atom. | Click on Add an electron pair tool.
Click on Chlorine atom and observe what happens. |
Next, I will show an electron pair shift in the Carbon-Chlorine bond. | |
Click on Add a curved arrow to represent an electron pair move.
Point to the window. |
Click on Add a curved arrow to represent an electron pair move.
Property window opens. |
Click on End arrow at center of new bond check box. | Click on End arrow at center of new bond check box.
It moves the electron pair to the correct position. |
Click on Carbon-Chlorine bond. | Click on Carbon-Chlorine bond. |
Point to the shift. | Place the cursor on the curved arrow and observe the electron shift. |
Point to the structure. | I will make the copy of this structure. |
Click on Add on arrow >>click between the structures. | Now, click on Add on arrow and click between the structures. |
Formation of a Carbo-cation is initialized by a base like Sodium Hydroxide(NaOH). | |
Click on Add or modify a group of atoms tool >> click above the arrow. | Click on Add or modify a group of atoms tool, click above the arrow. |
Type NaOH in the green box. | Type NaOH. |
Click on Selection tool>>Click on the text Base to select>>Right-click click on the arrow. | Click on Selection tool and select NaOH.
Then, right-click on the arrow. |
Point to the submenu.
Select Arrow >>click on Attach selection to arrow. |
In the submenu, select Arrow.
Click on Attach selection to arrow. |
Point to the dialogue box. | A dialogue box with heading Arrow associated appears. |
Point to drop down. | In the Role drop-down, select “Reactant” and click on Close. <PAUSE> |
Now, let's convert second EthylChloride to Ethyl Carbo-cation and Chloride ions. | |
Click on Eraser tool and click on Carbon-chlorine bond.
Point to products. |
Click on Eraser tool and click on Carbon-chlorine bond.
Ethane(CH3-CH3) and HCl are formed. |
Point to the central carbon. | When electrons shift from Carbon to Chlorine, Carbon gains a positive charge. |
Click on Increment the charge tool>>Click at the position from where Carbon-chlorine bond to deleted. | Click on Increment the charge tool.
Click at the position from where Carbon-chlorine bond was deleted. Ethyl Carbo-cation(CH3-CH2^+) is formed. |
Click on Decrement the charge tool>>click on HCl. | To form Chloride ion, click on Decrement the charge tool.
Click on HCl. Chloride(Cl^-) ion is formed. <PAUSE> |
Now let's move to single electron shift. | |
Point to Methylbromide. | Let's use the Methylbromide structure to obtain free radicals. |
Click on Add a curved arrow to represent a single electron move tool. | Click on Add a curved arrow to represent a single electron move tool. |
Click twice on Bromo-methane bond. | Click on Methylbromide bond to obtain a curved arrow.
Shift the Pencil tool a little on the bond, click again to get second curved arrow. |
Point to the Bromo-methane and curved arrows. | One curved arrow moves to bromo(Br) and other moves towards methyl(CH3).
Both Bromo(Br) and methyl(CH3) will get one electron each from the bonded pair of electrons. |
Point to the arrow. | To show the products, let's add an arrow.
Click on Add an arrow, click on Display area beside Methylbromide. |
Point to the free radicals. | Formation of free radicals involves heat in the reaction. |
Click on Add or modify a text tool.
Click on the Display area above the arrow. Type “Heat” in the green box. |
Click on Add or modify a text tool.
Click on Display area above the arrow. Type “Heat” in the green box. |
Click on Selection tool>>select “Heat”. | Click on Selection tool and select “Heat” |
Right-click on the arrow.
Point to the submenu>> Select Arrow >>click on Attach selection to arrow. |
Right-click on the arrow.
In the Submenu select Arrow. Click on Attach selection to arrow. |
Point to the dialogue box. | A dialogue box with heading Arrow associated appears. |
Point to drop down. | Notice that Role drop down list has more options. |
Point to Role drop down.
Select “Temperature”>>Click on Close. |
In the Role drop-down, select “Temperature” and
click on Close. |
Now let's create the free radicals. | |
Point to the structure. | I will copy the structure. |
Click on Eraser tool and click on Carbon-bromine bond.
Point to CH4 and HBr. |
Click on Eraser tool and click on Carbon-bromine bond.
Methane(CH4) and Hydrogen-bromide(HBr) are formed. |
Click on Add an unpaired electron tool.
Click on CH4 and HBr. |
Click on Add an unpaired electron tool.
Click on Methane(CH4) and Hydrogen-bromide(HBr) Methyl(CH3) and Bromium(Br) free radicals are formed. |
Click on Selection tool.
Drag the cursor over the reaction to select it. |
Click on Selection tool.
To create a reaction pathway, first select the complete reaction. |
Right-click on the selection.
Point to the Submenu. |
Now, right-click on the selection.
A submenu opens. |
Click on Create a new reaction.
Point to the previous reaction |
Click on Create a new reaction.
Reaction path is created. Drag to see the reaction pathway. Likewise, I will create the reaction pathway for the previous reaction. |
Right-click on the selection again.
Click on Destroy the reaction. |
We can also remove the reaction pathway, if we want to.
To do so, right-click on the reaction again and click on Destroy the reaction. |
Point to the reactants and products.
Drag any object. |
This action will remove the reaction pathway.
Drag any of the objects, and you will see that they can be moved individually. |
Now we move on to Resonance or Mesomery using double headed arrow. | |
Switch to GChempaint.
Point to the structure(CH3-NH2). |
I have opened a new GChemPaint window with structures of Nitromethane. |
Point to the structures | I had added curved arrows and charges to show electron shifts within the structures. |
Now let's add a double headed arrow. | |
Click on Add a double headed arrow.
Click on Display area beside Nitromethane. |
Click on Add a double headed arrow.
Click on Display area in between Nitromethanes. |
Point to the structures | The two structures are "Resonance structures" of Nitromethane.. |
Press CTRL+A to select the structures.
Right-click on the selection. Point to the Submenu. |
Press CTRL+A to select the structures.
Right-click on the selection. A submenu opens. |
Click on Create a new mesomery relationship | Click on Create a new mesomery relationship.
Drag to see the relationship. |
Slide Number
Resonance structures of Benzene |
Here is slide for resonance structures of Benzene. |
Now, let's learn to create a retro-synthetic pathway. | |
Point to the window. | I have opened a new GChemPaint window with the required structures. |
Point to the final product intermediates and starting material. | Retrosynthetic pathway
|
Point to the structures | In this pathway, the final product is Ortho-nitrophenol and the starting material is Benzene. |
Let's add a retro-synthetic arrow, to show the retro-synthetic pathway. | |
Click on Add arrow for a retrosynthetic step >> Click in between all the compounds. | Click on Add arrow for a retrosynthetic step.
Click between all the compounds. |
Press CTRL+A select all structures.
Right click on the selection. |
Press CTRL+A select all structures.
Right click on the selection. |
Point to Submenu.
Click on Create a new retrosynthesis pathway. |
A sub-menu opens.
Click on Create a new retrosynthesis pathway. Drag to see the created pathway. |
Let's summarize what we have learnt. | |
Slide Number 9
Summary |
In this tutorial we have learnt to
|
Slide Number 10
Assignment |
As an assignment
Using arrow properties 1. Create a reaction pathway for the reaction between Bromo-Ethane (C2H5Br) and Sodium(Na) with Dry ether as a solvent to obtain Butane(C4H10) and Sodium bromide(NaBr). 2. Add stoichiometric coefficients to the reactants and products. 3. Draw resonance structures of Naphtalene, Anthracene and Carbondioxide |
Point to the reaction pathway.
Point to the resonance structures |
This is the required reaction pathway.
These are the resonance structures of Naphthalene, Anthracene and Carbon-dioxide. |
Slide Number 10
Acknowledgement |
Watch the video available at this URL.
http://spoken-tutorial.org/What_is_a_Spoken_ Tutorial It summarizes the Spoken Tutorial project If you do not have good bandwidth, you can download and watch it |
Slide Number 11 | The Spoken Tutorial Project Team:
Conducts workshops using spoken tutorials Gives certificates to those who pass an on-line test For more details, please write to contact@spoken-tutorial.org |
Slide number 12 | Spoken Tutorial Project is a part of the Talk to a Teacher project
It is supported by the National Mission on Education through ICT, MHRD, Government of India More information on this Mission is available at this link |
This is Madhuri Ganapathi from IIT Bombay signing off. Thank you for joining. |