Difference between revisions of "GChemPaint/C2/Edit-Preferences-Templates-and-Residues/English-timed"

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|'''Narration'''
 
|'''Narration'''
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|00:10
 
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|In this tutorial, we will learn to
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|In this tutorial, we will learn to:
  
 
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|00:13
 
|00:13
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|* Edit Preferences
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|Edit Preferences
  
 
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|00:15
 
|00:15
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|* Manage Templates
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|Manage Templates
  
 
|-
 
|-
 
|00:17
 
|00:17
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|* Select and use ready Templates  
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|Select and use ready Templates  
  
 
|-
 
|-
 
|00:20
 
|00:20
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|* Add a New Template
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| Add a New Template
  
 
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|-
 
|00:24
 
|00:24
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|We will also learn  
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|We will also learn:
  
 
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|00:26
 
|00:26
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|* The uses of Residues and
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|The uses of Residues and
  
 
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|00:28
 
|00:28
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|* To edit Residues.
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|To edit Residues.
  
 
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|00:31
 
|00:31
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|Here I am using '''Ubuntu Linux''' OS version. 12.04
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|Here I am using '''Ubuntu Linux''' OS version. 12.04,
  
 
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|00:38
 
|00:38
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|'''GChemPaint''' version 0.12.10
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|'''GChemPaint''' version 0.12.10.
  
 
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|00:44
 
|00:44
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|To follow this tutorial, you should be familiar with,
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|To follow this tutorial, you should be familiar with  
  
 
|-
 
|-
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|01:58
 
|01:58
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|Observe the different types of  arrows on the tool box
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|Observe the different types of  arrows on the tool box.
  
 
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|02:02
 
|02:02
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|* Add an arrow for an irreversible reaction.  
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| Add an arrow for an irreversible reaction.  
  
 
|-
 
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|02:06
 
|02:06
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|* Add a pair of Arrows for a reversible reaction.
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| Add a pair of arrows for a reversible reaction.
  
 
|-
 
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|02:10
 
|02:10
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|* Add an arrow for a retrosynthesis step.
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| Add an arrow for a retrosynthesis step.
  
 
|-
 
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|02:14
 
|02:14
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|* Add a double headed arrow to represent mesomery.
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| Add a double headed arrow to represent mesomery.
  
 
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|-
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|02:24
 
|02:24
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|Click on  '''Add an arrow for an irreversible reaction'''  tool,
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|Click on  '''Add an arrow for an irreversible reaction'''  tool.
  
 
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|02:31
 
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|Likewise I will add  other types of arrows to the Display area.
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|Likewise, I will add  other types of arrows to the Display area.
  
 
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|03:38
 
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|Let's Click on '''Close''' button to close the window
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|Let's click on '''Close''' button, to close the window.
  
 
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|Press '''CTRL +A''' to select all objects.
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|Press '''Ctrl +A''' to select all objects.
  
 
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|Now click on the '''Display area''' to display '''Benzene''' structure.
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|Now click on the '''Display area''' to display '''Benzene''' structure.
  
 
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|'''Save as''' dialog box opens
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|'''Save as''' dialog box opens.
  
 
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|Click on '''Ok''' button.
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|Click on '''OK''' button.
  
 
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|Let's  close the “hexane” file.
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|Let's  close the '''hexane''' file.
  
 
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|* Find the nature of functional group attached to carbon chain.
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|Find the nature of functional group attached to carbon chain.
  
 
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|06:58
 
|06:58
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|* Know the structure of  functional group.   
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|Know the structure of  functional group.   
  
 
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|07:01
 
|07:01
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|* Add a new functional group to the database.
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| Add a new functional group to the database.
  
 
|-
 
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|07:04
 
|07:04
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|Go to '''Tools''' menu click on '''Edit residues.'''
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|Go to '''Tools''' menu, click on '''Edit residues.'''
  
 
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|Let's now add a new residue - '''Hydroxy''' group.   
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|Let's now add a new residue - '''Hydroxy''' group.   
  
 
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|A '''Submenu''' opens with '''O''' and '''Os'''. Select O
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|A '''Submenu''' opens with '''O''' and '''Os'''. Select 'O'.
  
 
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|08:40
 
|08:40
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|Let's click on '''Close''' button to close the window
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|Let's click on '''Close''' button to close the window.
  
 
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|08:48
 
|08:48
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|Let's summarise
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|Let's summarize.
  
 
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|08:50
 
|08:50
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|In this tutorial, we have learnt to
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|In this tutorial, we have learnt to:
  
 
|-
 
|-
 
|08:53
 
|08:53
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|* Edit Preferences
+
| Edit Preferences
  
 
|-
 
|-
 
|08:55
 
|08:55
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|* Manage Templates
+
|Manage Templates
  
 
|-
 
|-
 
|08:56
 
|08:56
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|* Select and use ready Templates  
+
| Select and use ready Templates  
  
 
|-
 
|-
 
|08:59
 
|08:59
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|* Add a New Template  
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| Add a New Template  
  
 
|-
 
|-
 
|09:01
 
|09:01
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|* Uses of Residues and To edit Residues.
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| Uses of Residues and To edit Residues.
  
 
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|09:07
 
|09:07
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|As an assignment Select and use Saccharides from Templates list.
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|As an assignment: * Select and use Saccharides from Templates list.
  
 
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|09:12
 
|09:12
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|* Explore other residues.
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| Explore other residues.
  
 
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|09:20
 
|09:20
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|It summarises the Spoken Tutorial project
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|It summarizes the Spoken Tutorial project.
  
 
|-
 
|-
 
|09:24
 
|09:24
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|If you do not have good bandwidth, you can download and watch it  
+
|If you do not have good bandwidth, you can download and watch it.
  
 
|-
 
|-
 
|09:29
 
|09:29
−
|The Spoken Tutorial Project Team Conducts workshops using spoken tutorials
+
|The Spoken Tutorial Project Team: Conducts workshops using spoken tutorials.
  
 
|-
 
|-
 
|09:33
 
|09:33
−
|Gives certificates to those who pass an online test  
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|Gives certificates to those who pass an online test.
  
 
|-
 
|-
 
|09:37
 
|09:37
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|For more details, please write to '''contact@spoken-tutorial.org'''  
+
|For more details, please write to '''contact@spoken-tutorial.org'''.
  
 
|-
 
|-
 
|09:45
 
|09:45
−
|Spoken Tutorial Project is a part of the Talk to a Teacher project  
+
|Spoken Tutorial Project is a part of the Talk to a Teacher project.
  
 
|-
 
|-
 
|09:50
 
|09:50
−
|It is supported by the National Mission on Education through ICT, MHRD, Government of India
+
|It is supported by the National Mission on Education through ICT, MHRD, Government of India.
  
 
|-
 
|-

Latest revision as of 17:45, 27 March 2017

Time Narration
00:01 Hello everyone. Welcome to the tutorial on Edit Preferences, Templates and Residues in GChemPaint.
00:10 In this tutorial, we will learn to:
00:13 Edit Preferences
00:15 Manage Templates
00:17 Select and use ready Templates
00:20 Add a New Template
00:24 We will also learn:
00:26 The uses of Residues and
00:28 To edit Residues.
00:31 Here I am using Ubuntu Linux OS version. 12.04,
00:38 GChemPaint version 0.12.10.
00:44 To follow this tutorial, you should be familiar with
00:49 GChemPaint chemical structure editor.
00:53 If not, for relevant tutorials, please visit our website.
00:59 I have already opened a new GChemPaint application.
01:03 Let's begin the tutorial by editing Preferences.
01:07 Go to Edit menu, navigate to Preferences and click on it.
01:13 GChemPaint Preferences window opens.
01:16 The first field, Default Compression Level For GChemPaint Files, is used when saving files.
01:24 By default, it is zero.
01:28 If not zero, the file will be compressed using gzip.
01:33 I will cover Invert wedge hashes in an another tutorial.
01:40 In GchemPaint, each document has an associated theme.
01:46 Let's retain the Default Theme as GChemPaint.
01:50 Now, I will explain about Arrows in detail, under Themes section.
01:58 Observe the different types of arrows on the tool box.
02:02 Add an arrow for an irreversible reaction.
02:06 Add a pair of arrows for a reversible reaction.
02:10 Add an arrow for a retrosynthesis step.
02:14 Add a double headed arrow to represent mesomery.
02:19 Let's add these 4 arrows to the Display area.
02:24 Click on Add an arrow for an irreversible reaction tool.
02:28 Then click on Display area.
02:31 Likewise, I will add other types of arrows to the Display area.
02:41 Select Arrows from the Themes field in the Preferences dialog box.
02:47 A Contextual menu opens.
02:50 Here we can increase or decrease Length, Width and Distance of the arrows.
02:57 Click on up or down arrow triangles with the mouse.
03:02 And Observe the changes in the arrows in the Display area.
03:10 Now let's learn about Arrow heads.
03:14 The default values of A, B and C are displayed here.
03:21 The A, B and C parameters help to vary the shape of the arrow heads.
03:28 Increase or decrease each one and observe the changes in the arrow heads.
03:38 Let's click on Close button, to close the window.
03:42 Let's clear the Display area.
03:46 Press Ctrl +A to select all objects.
03:49 Go to Edit menu, click on Clear.
03:53 Next, let's learn how to manage Templates.
03:58 Click on Use or manage templates tool.
04:01 The property dialog box opens below.
04:05 Property dialog box contains Templates with a drop down list.
04:10 List contains Amino acids, Aromatic hydrocarbons, Nucleic bases, Nucleosides and Saccharides.
04:19 Each item has a Submenu.
04:23 Let's select Aromatic Hydrocarbons and click on Benzene from the Submenu.
04:31 Benzene structure is displayed on the property page.
04:35 Now click on the Display area to display Benzene structure.
04:40 Likewise let's select Naphtalene structure and click on the Display area.
04:49 Select and place other structures on the Display area, on your own.
04:55 Let's save the file now.
04:57 Click on Save the current file icon on the toolbar.
05:01 Save as dialog box opens.
05:04 Enter the file name as Benzene. Click on Save button.
05:10 Now let's learn to add a New template to the existing Template list.
05:16 Click on Open a file icon from the toolbar.
05:20 A window with files and folders opens.
05:24 Select the file named “Hexane” from the list.
05:27 Click on Open button.
05:31 Click on Add button from the template's property page.
05:35 New template property page opens.
05:38 Property page has two fields – Name and Category.
05:42 Category field has a drop down list.
05:47 We can select from the list or add our own category.
05:52 Let's add a new Category, by typing Hydrocarbons in the text field.
05:58 In the Name field, enter the name of the compound as “Hexane”.
06:03 Click on the Hexane structure on the Display area.
06:07 It will be displayed on the New template property page.
06:12 Click on OK button.
06:15 Now, click on Templates drop-down.
06:19 Select Hydrocarbons category.
06:22 Observe that Hexane structure is added to the Template list.
06:27 Add Octane structure to Hydrocarbons category, on your own.
06:32 Let's close the hexane file.
06:35 Go to File menu, select Close to close the file.
06:41 Click on Select one or more objects tool to close the Templates property page.
06:47 Now, let's learn about Residues.
06:51 Residues are used to,
06:53 Find the nature of functional group attached to carbon chain.
06:58 Know the structure of functional group.
07:01 Add a new functional group to the database.
07:04 Go to Tools menu, click on Edit residues.
07:09 Residues window opens.
07:12 It has three buttons - New, Save and Delete.
07:18 New button has a drop down list.
07:21 Select n-Pr for from the list.
07:25 Identity tab shows Symbol and Name of the selected residue.
07:32 Formula tab shows the Skeletal structure of the selected residue.
07:38 Likewise, let's select s-Bu for Secondary Butyl.
07:44 Observe the Symbol, Name and Skeletal structure of the selected residue.
07:52 Let's now add a new residue - Hydroxy group.
07:57 To add a new residue, click on New button.
08:02 In the Symbol field type O-H.
08:06 Name it as Hydroxy.
08:09 Click on the Formula tab.
08:11 You will see a bulleted bond.
08:14 Place the cursor near the bond and press capital O.
08:19 A Submenu opens with O and Os. Select 'O'.
08:24 O-H group attaches to the bond.
08:28 Click on Save button.
08:31 Now, click on New button to view the list.
08:35 Observe that O-H residue is added to the list.
08:40 Let's click on Close button to close the window.
08:44 With this we come to the end of this tutorial.
08:48 Let's summarize.
08:50 In this tutorial, we have learnt to:
08:53 Edit Preferences
08:55 Manage Templates
08:56 Select and use ready Templates
08:59 Add a New Template
09:01 Uses of Residues and To edit Residues.
09:07 As an assignment: * Select and use Saccharides from Templates list.
09:12 Explore other residues.
09:16 Watch the video available at this URL. http://spoken-tutorial.org/What_is_a_Spoken_Tutorial
09:20 It summarizes the Spoken Tutorial project.
09:24 If you do not have good bandwidth, you can download and watch it.
09:29 The Spoken Tutorial Project Team: Conducts workshops using spoken tutorials.
09:33 Gives certificates to those who pass an online test.
09:37 For more details, please write to contact@spoken-tutorial.org.
09:45 Spoken Tutorial Project is a part of the Talk to a Teacher project.
09:50 It is supported by the National Mission on Education through ICT, MHRD, Government of India.
09:57 More information on this Mission is available at this link [http://spoken-tutorial.org/NMEICT-Intro ]
10:04 This is Madhuri Ganpathi from IIT Bombay signing off. Thank you for joining.

Contributors and Content Editors

Gaurav, PoojaMoolya, Pratik kamble, Sandhya.np14

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