View source for OpenFOAM/C3/Using-PyFoam-Utilities/English

Tutorial : 22

Name : Using PyFoam Utilities

Script : Anmol Sahoo and Rahul Joshi

Narration : Rahul Joshi

Keywords : OpenFOAM, PyFoam, CFD, Linux, PyFoam utilities,shockTube


{| style="border-spacing:0;"
| style="border-top:0.05pt solid #000000;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| <center>'''Visual Cue'''</center>
| style="border:0.05pt solid #000000;padding:0.097cm;"| <center>'''Narration'''</center>

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| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Show Slide : Title
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Welcome to the spoken tutorial on Using '''PyFoam Utilities'''

|-
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Show Slide : Learning Objectives
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| In this tutorial we will learn :


* About '''PyFoam Utilities'''
* How to use '''PyFoam	 Utilites'''
* How to run and plot''' '''data for the '''shockTube''' case using '''PyFoam Utilites'''



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| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Show Slide :

System Requirement
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| To record this tutorial I am using:


* '''Ubuntu Linux Operating System '''14.04
* '''OpenFOAM v2.3.0'''
* '''PyFoam 0.6.5'''



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| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Show Slide :

Pre-requisite
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| As a prerequisite user should have :

* basic knowledge of running commands on the '''Linux terminal'''
* And some experience of running and analyzing '''OpenFOAM''' cases



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| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Show slide : Introduction to PyFoam Utilities
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Let me introduce you to '''PyFoam utilities.'''


* '''Utilities '''are''' Python programs '''which come inbuilt with '''PyFoam.'''<br/> 

* Each '''utility''' has a specific function.<br/> 

* '''Utilities''' are executed from the '''command line.'''



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| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Show slide : List of Utilities
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| List of '''utilites''' that can be viewed using '''tab completion'''

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| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Open terminal. Type '''pyFoam''' and press '''Tab''' twice
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Open the terminal 


The list of '''utilities''' can be viewed by 

* typing '''pyFoam '''
* and then pressing '''Tab '''key twice



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| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Show slide : List of utilities
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Let me switch back to the slides.

Each '''utility''' can be executed with the '''–help''' option 


This helps us to find out what it does and what its options are

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| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Show Slide : using utilties



| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| We are going to use the following '''PyFoam Utilities''' to run the '''Shock Tube''' case. 


We will use -

* '''PyFoamRunner.py'''
* '''PyFoamSamplePlot.py'''

And then plot the necessary data using '''PyFoam'''

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| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Show slide : PyFoamRunner.py
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| '''PyFoamRunner.py''' can be used to run '''cases'''


It also generates '''log files '''for later use

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| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Show slide : PyFoamSamplePlot.py
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| This '''utility''' is used to plot the various data obtained from the previously set up '''sampleDict.'''




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| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Show slide : Problem definition


Diagram 
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| '''Shock Tube '''is an '''instrument''' -

* used to replicate and direct blast waves at a sensor 
* to model actual explosion and their effects

In this case, the rectangular tube has low pressure on the right side and high pressure on the left side.


Both the pressures zones are seperated by a thin diaphgram.

|-
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Type '''run/tutorials/compressible/rhoCentralFoam'''
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Open the '''Terminal''' and type the path for '''rhoCentralFoam''' inside '''compressible solver.'''

|-
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Type '''ls'''
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Type '''ls'''

|-
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Type the command shown in Narration column
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Type:

'''cd $FOAM_TUTORIALS/compressible/rhoCentralFoam/'''

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| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Type '''ls'''
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Now type '''ls'''. You can see the '''shockTube''' case

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| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Type '''cd shockTube'''
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Type '''cd shockTube'''

|-
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Point to the 3 files
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| You can see three folders '''0.org , constant '''and''' system.'''

|-
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| On Terminal type

'''cp -r 0.org 0'''
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| We need to copy the '''0 '''file from''' 0.org''' 


So type '''cp -r 0.org 0'''

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| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Type''' cd system'''
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Now, go to the '''system''' folder by typing 

'''cd system'''

|-
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Type 

'''gedit sampleDict'''
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Open the '''sampleDict''' file using '''the editor of your choice.'''

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| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| In '''sampleDict '''file, do as narrated



| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Go to the bottom of the file and '''Remove U.Component(0).'''


Replace it with '''Ux Uy '''and '''Uz.'''


Remove '''rho''' as well.

|-
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Save the file and exit
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Save and exit the file.

|-
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Type '''cd ..'''
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Go one level back by typing cd ..

|-
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Type '''blockMesh '''
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Run the command '''blockMesh''' to '''mesh''' the '''geometry.'''

|-
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Type '''setFields'''
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| After this type '''setFields''' to set the pressure boundary condition.

|-
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Type

'''pyFoamRunner.py rhoCentralFoam'''
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Now we will use the '''pyFoam utility of pyFoamRunner.py'''


Type '''pyFoamRunner.py <'''followed by name of the '''solver > i.e. RhoCentralFoam'''


This runs the '''case''' and creates a '''postProcessing log.'''

|-
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Switch to the '''terminal '''and type '''ls''' 



| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Go back to the terminal and type '''ls.'''


We can see the log files which are generated.

|-
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Type '''sample'''
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Now '''type sample''' to run the '''sample utility.'''

|-
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Type

'''pyFoamSamplePlot.py ./ --dir=postProcessing/sets –info'''
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| After this we can plot for various '''time steps''' using-


'''pyFoamSamplePlot.py ./ --dir=postProcessing/sets –info'''


This will show which fields we have with us.

|-
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Type '''pyFoamSamplePlot.py ./ --dir=postProcessing/sets --field=T --mode=timesInOne | gnuplot'''
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Then type '''pyFoamSamplePlot.py ./ --dir=postProcessing/sets --field=T --mode=timesInOne | gnuplot'''

|-
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| 
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| The output generated will be a '''png file.'''

|-
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Type '''ls'''


Highlight/point to the '''png file'''
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Type '''ls'''. 


We can see the '''png''' file which is generated. 

|-
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Show slide : Summary
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Let us summarize.


In this tutorial, we learnt about '''PyFoam Utilities.'''


We also learnt to-

# Check for various '''pyFoam utilities'''
# '''pyFoamRunner.py''' to run the '''solver''' 
# '''pyFoamSamplePlot''' utility to generate a '''png''' file 



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| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Show Slide 


Forum to answer questions
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Please post your timed queries in this forum.




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| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Show Slide 


Forum to answer questions
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| Please post your general queries on '''OpenFOAM''' in this forum.

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| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Show Slide 


Textbook Companion 
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| The '''FOSSEE '''team coordinates the TBC project.

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| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Show Slide 

Acknowledgement 



| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| The Spoken Tutorial Project is funded by NMEICT, MHRD, Govt. of India 


For more details , visit this website.

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| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:none;padding:0.097cm;"| Thank You
| style="border-top:none;border-bottom:0.05pt solid #000000;border-left:0.05pt solid #000000;border-right:0.05pt solid #000000;padding:0.097cm;"| This is Rahul Joshi from IIT Bombay signing off. Thanks for watching

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