Jmol-Application/C2/Structures-from-Database/English-timed - Revision history

PoojaMoolya at 12:18, 28 March 2017

2017-03-28T12:18:01Z

Show changes

PoojaMoolya at 12:08, 9 March 2017

2017-03-09T12:08:10Z

Pratik kamble at 09:06, 26 October 2016

2016-10-26T09:06:45Z

Sandhya.np14 at 12:00, 5 June 2016

2016-06-05T12:00:01Z

Sandhya.np14 at 10:43, 31 May 2016

2016-05-31T10:43:29Z

Sandhya.np14 at 07:43, 30 May 2016

2016-05-30T07:43:57Z

Sandhya.np14 at 12:12, 28 May 2016

2016-05-28T12:12:54Z

Sandhya.np14 at 09:49, 11 February 2016

2016-02-11T09:49:09Z

Sandhya.np14 at 07:27, 11 February 2016

2016-02-11T07:27:56Z

Sandhya.np14 at 10:51, 14 September 2015

2015-09-14T10:51:03Z

@@ Line 397: / Line 397: @@
 |-
 | 08:03
-|'''Histidine '''
+|'''Histidine ''' '''Phenylalanine'''
-−
-|-
-| 08:04
-|'''Phenylalanine'''
 |-

@@ Line 13: / Line 13: @@
 |-
 | 00:10
-| * '''Load''' chemical structures from '''PubChem''' database and
+|'''Load''' chemical structures from '''PubChem''' database and
 |-
 | 00:14
-| * Convert '''2D structure'''s drawn in '''GChemPaint''' to '''3D model'''s in '''Jmol'''.
+|Convert '''2D structure'''s drawn in '''GChemPaint''' to '''3D model'''s in '''Jmol'''.
 |-
@@ Line 33: / Line 33: @@
 |-
 | 00:35
-| * '''Ubuntu '''OS version '''12.04'''
+|'''Ubuntu '''OS version '''12.04'''
 |-
 | 00:40
-| * '''Jmol''' version '''12.2.2'''
+|'''Jmol''' version '''12.2.2'''
 |-
 |00:44
-| * '''Java''' version '''7'''
+|'''Java''' version '''7'''
 |-
 | 00:46
-| * '''GChemPaint''' version '''0.12.10'''
+|'''GChemPaint''' version '''0.12.10'''
 |-
 | 00:51
-| * '''Mozilla Firefox browser''' '''22.0'''.
+|'''Mozilla Firefox browser''' '''22.0'''.
 |-
@@ Line 257: / Line 257: @@
 |-
 | 05:08
-| * '''Load''' structure of '''caffeine''' from '''Pubchem''' database.
+|'''Load''' structure of '''caffeine''' from '''Pubchem''' database.
 |-
 | 05:11
-| * Highlight the important features in the molecule.
+|Highlight the important features in the molecule.
 |-
 | 05:15
-| * Modify the display to '''wireframe'''.
+|Modify the display to '''wireframe'''.
 |-
@@ Line 369: / Line 369: @@
 |-
 | 07:32
-| * '''Load''' chemical structures from '''Pubchem''' data base.
+|'''Load''' chemical structures from '''Pubchem''' data base.
 |-
 | 07:34
-| * Modify the display of '''Phenol''' and '''Cholesterol'''.
+|Modify the display of '''Phenol''' and '''Cholesterol'''.
 |-
 | 07:38
-| * Convert 2D structures drawn in '''GChemPaint''' to 3D models in '''Jmol'''.
+|Convert 2D structures drawn in '''GChemPaint''' to 3D models in '''Jmol'''.
 |-
 | 07:44
-| * Convert 2D structures of '''Alanine, Adenosine''' and '''Alpha-D-glucopyranose '''to 3D models.
+|Convert 2D structures of '''Alanine, Adenosine''' and '''Alpha-D-glucopyranose '''to 3D models.
 |-
@@ Line 389: / Line 389: @@
 |-
 | 07:56
-| # Draw 2D structures of the following '''Amino acids''' in '''GChemPaint'''-
+|Draw 2D structures of the following '''Amino acids''' in '''GChemPaint'''-
 |-
 | 08:01
-| * '''Cysteine '''
+|'''Cysteine '''
 |-
 | 08:03
-| * '''Histidine '''
+|'''Histidine '''
 |-
 | 08:04
-| * '''Phenylalanine'''
+|'''Phenylalanine'''
 |-
 | 08:06
-| # Save as '.mol' files.
+|Save as '.mol' files.
 |-
 | 08:09
-| # Open the files in '''Jmol''' and modify the display.
+|Open the files in '''Jmol''' and modify the display.
 |-
 | 08:12
-| Watch the video available at this URL:
+| Watch the video available at this URL:http://spoken-tutorial.org/What_is_a_Spoken_Tutorial
 http://spoken-tutorial.org/What_is_a_Spoken_Tutorial
 |-
@@ Line 430: / Line 429: @@
 |-
 | 08:26
-|* Conducts workshops using spoken tutorials.
+|Conducts workshops using spoken tutorials.
 |-
 | 08:29
-|* Gives certificates to those who pass an on-line test.
+|Gives certificates to those who pass an on-line test.
 |-
 | 08:33
-| For more details, please write to:
+| For more details, please write to:'''contact@spoken-tutorial.org'''
 '''contact@spoken-tutorial.org'''
 |-
@@ Line 451: / Line 449: @@
 |-
 | 08:52
-| More information on this mission is available at this link:
+| More information on this mission is available at this link:http://spoken-tutorial.org/NMEICT-Intro
 http://spoken-tutorial.org/NMEICT-Intro
 |-

@@ Line 17: / Line 17: @@
 |-
 | 00:14
-| * Convert 2D structures drawn in '''GChemPaint''' to 3D models in '''Jmol'''.
+| * Convert '''2D structure'''s drawn in '''GChemPaint''' to '''3D model'''s in '''Jmol'''.
 |-
@@ Line 33: / Line 33: @@
 |-
 | 00:35
-| * '''Ubuntu Linux '''OS version. '''12.04'''
+| * '''Ubuntu '''OS version '''12.04'''
 |-
@@ Line 41: / Line 41: @@
 |-
 |00:44
-| * '''Java''' version '''7'''.
+| * '''Java''' version '''7'''
 |-
@@ Line 49: / Line 49: @@
 |-
 | 00:51
-| * '''Mozilla Firefox''' browser '''22.0'''
+| * '''Mozilla Firefox browser''' '''22.0'''.
 |-
@@ Line 85: / Line 85: @@
 |-
 | 01:40
-| Any molecule listed in the database can be loaded by typing the following in the text box:
+| Any molecule listed in the database can be loaded by typing the following, in the text box:
 |-
@@ Line 109: / Line 109: @@
 |-
 | 02:01
-| Please visit '''Pubchem''' database website for information on identification numbers for a particular chemical.
+| Please visit '''Pubchem''' database website for information on identification numbers, for a particular chemical.
 |-
@@ Line 125: / Line 125: @@
 |-
 | 02:20
-| A Model of phenol is displayed on the panel.
+| A model of phenol is displayed on the panel.
 |-
@@ Line 137: / Line 137: @@
 |-
 | 02:36
-| We can add substituents to the benzene '''ring''' of phenol.
+| We can add substituents to the '''benzene ring''' of phenol.
 |-
@@ Line 149: / Line 149: @@
 |-
 | 02:52
-| Now, let's replace a '''hydrogen number 10 '''attached to the '''carbon atom number 4 '''with an '''amino group'''.
+| Now, let's replace a '''hydrogen'''- number 10, attached to the '''carbon''' atom -number 4,  with an '''amino group'''.
 |-
@@ Line 157: / Line 157: @@
 |-
 | 03:06
-| Click on '''hydrogen number 10'''.
+| Click on '''hydrogen'''- number 10.
 |-
@@ Line 181: / Line 181: @@
 |-
 | 03:36
-| Complex structures which are difficult to create, can easily be loaded on the '''panel'''.
+| Complex structures which are difficult to create, can easily be loaded on the panel.
 |-
@@ Line 205: / Line 205: @@
 |-
 | 04:02
-| We can highlight the features like '''double-bond''' and '''side-chain '''in the molecule.
+| We can highlight the features like '''double-bond''' and '''side-chain''', in the molecule.
 |-
@@ Line 245: / Line 245: @@
 |-
 | 04:54
-| Using '''Pop-up'''-menu change the color to violet.
+| Using '''Pop-up'''-menu, change the color to violet.
 |-
 |04:59
-| On the '''panel, '''we have a model of '''Cholesterol '''with important features highlighted.
+| On the panel, we have a model of '''Cholesterol '''with important features highlighted.
 |-
@@ Line 257: / Line 257: @@
 |-
 | 05:08
-| * '''Load''' structure of caffeine from '''Pubchem''' database.
+| * '''Load''' structure of '''caffeine''' from '''Pubchem''' database.
 |-
@@ Line 277: / Line 277: @@
 |-
 | 05:31
-| Here, I have a model of '''aminoacid Alanine''' on the panel.
+| Here, I have a model of '''amino acid Alanine''' on the panel.
 |-
 | 05:36
-| '''2D structure''' of this molecule was drawn in software called '''GChemPaint.'''
+| '''2D structure''' of this molecule was drawn in a software called '''GChemPaint.'''
 |-
@@ Line 309: / Line 309: @@
 |-
 | 06:12
-| '''Nuclioside -Adenosine'''
+| '''Nuclioside -Adenosine''' and
 |-
@@ Line 317: / Line 317: @@
 |-
 | 06:19
-| I have saved them in ''''.mol'''' format on my '''Desktop.'''
+| I have saved them in '.mol' format on my '''Desktop.'''
 |-
@@ Line 413: / Line 413: @@
 |-
 | 08:12
-| Watch the video available at this URL.
+| Watch the video available at this URL:
 http://spoken-tutorial.org/What_is_a_Spoken_Tutorial

@@ Line 305: / Line 305: @@
 |-
 | 06:10
-| * '''Amino acid -Alanine'''
+| '''Amino acid -Alanine'''
 |-
 | 06:12
-| * '''Nuclioside -Adenosine'''
+| '''Nuclioside -Adenosine'''
 |-
 | 06:14
-| * '''Saccharide -Alpha-D glucopyranose'''.
+| '''Saccharide -Alpha-D glucopyranose'''.
 |-

@@ Line 61: / Line 61: @@
 |-
 | 01:07
-| The ''''File'''' menu on the menu bar has an option '''Get MOL.'''
+| The '''File'''' menu on the menu bar has an option '''Get MOL.'''
 |-

@@ Line 61: / Line 61: @@
 |-
 | 01:07
-| The ''''File'''' menu on the menu bar has an option ''''Get MOL'.'''
+| The ''''File'''' menu on the menu bar has an option '''Get MOL.'''
 |-
 | 01:12
-| This loads molecules from chemical structure database ''''PubChem'.'''
+| This loads molecules from chemical structure database '''PubChem.'''
 |-
 | 01:17
-| It also has another option ''''Get PDB'''' to load '''protein''' structures from '''Protein Data Bank'''.
+| It also has another option '''Get PDB''' to load '''protein''' structures from '''Protein Data Bank'''.
 |-
 | 01:26
-| This feature will be explained in detail in another tutorial.
+| This feature will be explained in detail, in another tutorial.
 |-
 | 01:31
-| To load a chemical structure on the panel, click on ''''Get Mol''''.
+| To '''load''' a chemical structure on the panel, click on '''Get Mol'''.
 |-
 | 01:36
-| An ''''Input'''' dialog-box opens on the '''screen'''.
+| An '''Input''' dialog-box opens on the '''screen'''.
 |-
@@ Line 337: / Line 337: @@
 |-
 | 06:51
-| A '''3D model''' of ''''Alanine'''' opens on screen.
+| A '''3D model''' of '''Alanine''' opens on screen.
 |-
 | 06:55
-| Open the '''modelkit''' menu and click on ''''fix hydrogens and minimize'''' option.
+| Open the '''modelkit''' menu and click on '''fix hydrogens and minimize''' option.
 |-
@@ Line 349: / Line 349: @@
 |-
 | 07:08
-| As with any '''".mol"''' file, we can change the display using menu bar and also '''Pop-up '''menu.
+| As with any ".mol" file, we can change the display using menu bar and also '''Pop-up '''menu.
 |-
@@ Line 456: / Line 456: @@
 |-
 | 08:57
-| This is Snehalatha from IIT Bombay, signing off. Thank you for joining.
+| This is Snehalatha from '''IIT Bombay''', signing off. Thank you for joining.
 |}

@@ Line 117: / Line 117: @@
 |-
 | 02:13
-| So, type: ''''phenol'''' in the '''Input '''text box.
+| So, type: "phenol" in the '''Input '''text-box.
 |-
@@ Line 125: / Line 125: @@
 |-
 | 02:20
-| A Model of '''phenol''' is displayed on the panel.
+| A Model of phenol is displayed on the panel.
 |-
@@ Line 137: / Line 137: @@
 |-
 | 02:36
-| We can add substituents to the '''benzene''' '''ring''' of '''phenol'''.
+| We can add substituents to the benzene '''ring''' of phenol.
 |-
@@ Line 185: / Line 185: @@
 |-
 | 03:42
-| For example '''cholesterol.'''
+| For example: '''cholesterol.'''
 |-
@@ Line 193: / Line 193: @@
 |-
 | 03:47
-| Click on '''Get Mol''' option,   in the text box type: '''Cholesterol '''.
+| Click on '''Get Mol''' option. In the text-box, type: '''Cholesterol '''.
 |-
@@ Line 201: / Line 201: @@
 |-
 | 03:57
-| A molecule of '''Cholesterol '''is displayed on the '''panel'''.
+| A molecule of '''Cholesterol '''is displayed on the panel.
 |-
@@ Line 209: / Line 209: @@
 |-
 | 04:08
-| To highlight double-bond,  let us first change the color of '''carbon''' atoms of the double-bond.
+| To highlight double-bond, let us first change the color of '''carbon''' atoms of the double-bond.
 |-
 | 04:15
-| Click on ''''Select atoms'''' icon in the tool bar.
+| Click on '''Select atoms''' icon in the tool bar.
 |-
@@ Line 233: / Line 233: @@
 |-
 | 04:37
-| Now Click on ''' “Rotate molecule”''' option in the tool bar.
+| Now click on ''' “Rotate molecule”''' option in the tool bar.
 |-
@@ Line 257: / Line 257: @@
 |-
 | 05:08
-| * Load structure of caffeine from '''Pubchem''' database .
+| * '''Load''' structure of caffeine from '''Pubchem''' database.
 |-
@@ Line 273: / Line 273: @@
 |-
 | 05:24
-| We can convert '''2D structure'''s of molecules drawn in another software into '''3D model'''s.
+| We can convert '''2D structure'''s of molecules, drawn in another software, into '''3D model'''s.
 |-
@@ Line 281: / Line 281: @@
 |-
 | 05:36
-| 2D structure of this molecule was drawn in software called '''GChemPaint.'''
+| '''2D structure''' of this molecule was drawn in software called '''GChemPaint.'''
 |-
 | 05:42
-| The structure was saved as a ''''.mol' '''file.
+| The structure was saved as a ".mol" file.
 |-
 | 05:46
-| '''GchemPaint '''is an Open source software for drawing 2D chemical structures.
+| '''GchemPaint '''is an '''Open source software''' for drawing '''2D''' chemical structures.
 |-
@@ Line 297: / Line 297: @@
 |-
 | 05:56
-| To draw structures and save in '.mol' format, refer to '''Analysis of Compounds''' tutorial.
+| To draw structures and '''save''' in ".mol" format, refer to '''Analysis of Compounds''' tutorial.
 |-
 | 06:05
-| Shown on this Gchempaint display area are 2D drawings of-
+| Shown on this '''Gchempaint''' display area are 2D drawings of-
 |-
@@ Line 321: / Line 321: @@
 |-
 | 06:24
-| First, let's view the 2D structure of '''Alanine '''as 3D model in '''Jmol Application'''.
+| First let's view the 2D structure of '''Alanine '''as 3D model, in '''Jmol Application'''.
 |-
@@ Line 333: / Line 333: @@
 |-
 | 06:40
-| I will choose '''Desktop''' folder and click on open. Choose the file '''Alanine.mol '''and click on '''Open''' button.
+| I will choose '''Desktop''' folder and click on '''Open'''. Choose the file 'Alanine.mol' and click on '''Open''' button.
 |-
 | 06:51
-| A 3D model of ''''Alanine'''' opens on screen.
+| A '''3D model''' of ''''Alanine'''' opens on screen.
 |-
@@ Line 349: / Line 349: @@
 |-
 | 07:08
-| As with any '''.mol''' file, we can change the display using menu bar and also '''Pop-up '''menu.
+| As with any '''".mol"''' file, we can change the display using menu bar and also '''Pop-up '''menu.
 |-
@@ Line 369: / Line 369: @@
 |-
 | 07:32
-| * Load chemical structures from '''Pubchem''' data base.
+| * '''Load''' chemical structures from '''Pubchem''' data base.
 |-
@@ Line 405: / Line 405: @@
 |-
 | 08:06
-| # Save as ''''.mol' '''files.
+| # Save as '.mol' files.
 |-
@@ Line 414: / Line 414: @@
 | 08:12
 | Watch the video available at this URL.
-http://spoken-tutorial.org/What]_is_a_Spoken_Tutorial
+http://spoken-tutorial.org/What_is_a_Spoken_Tutorial
 |-
 | 08:16
-| It summarizes the Spoken Tutorial project.
+| It summarizes the '''Spoken Tutorial''' project.
 |-
@@ Line 430: / Line 430: @@
 |-
 | 08:26
-| Conducts workshops using spoken tutorials.
+|* Conducts workshops using spoken tutorials.
 |-
 | 08:29
-| Gives certificates to those who pass an on-line test.
+|* Gives certificates to those who pass an on-line test.
 |-
 | 08:33
-| For more details, please write to:  contact@spoken-tutorial.org
+| For more details, please write to:
 |-
@@ Line 450: / Line 451: @@
 |-
 | 08:52
-| More information on this mission is available at this link: http://spoken-tutorial.org/NMEICT-Intro
+| More information on this mission is available at this link:
 |-

@@ Line 5: / Line 5: @@
 |-
 | 00:01
-| Welcome to this tutorial on '''Structures from Database''' in '''Jmol'''
+| Welcome to this tutorial on '''Structures from Database''' in '''Jmol'''.
 |-
@@ Line 33: / Line 33: @@
 |-
 | 00:35
-| * '''Ubuntu Linux '''OS version. 12.04
+| * '''Ubuntu Linux '''OS version. '''12.04'''
 |-
 | 00:40
-| * '''Jmol''' version 12.2.2
+| * '''Jmol''' version '''12.2.2'''
 |-
 |00:44
-| * '''Java''' version 7.
+| * '''Java''' version '''7'''.
 |-
 | 00:46
-| * '''GChemPaint''' version 0.12.10
+| * '''GChemPaint''' version '''0.12.10'''
 |-
 | 00:51
-| * '''Mozilla Firefox''' browser 22.0
+| * '''Mozilla Firefox''' browser '''22.0'''
 |-
@@ Line 57: / Line 57: @@
 |-
 | 01:00
-| '''Jmol''' has a feature to '''load''' '''structure'''s of compounds listed in the '''database'''.
+| '''Jmol''' has a feature to '''load''' '''structure'''s of compounds listed in the database.
 |-
@@ Line 81: / Line 81: @@
 |-
 | 01:36
-| An ''''Input'''' dialog box opens on the '''screen'''.
+| An ''''Input'''' dialog-box opens on the '''screen'''.
 |-