GChemPaint/C2/Overview-of-GChemPaint/English - Revision history

Madhurig at 09:56, 19 February 2015

2015-02-19T09:56:36Z

Nancyvarkey at 10:13, 28 October 2014

2014-10-28T10:13:29Z

Madhurig at 11:07, 27 October 2014

2014-10-27T11:07:02Z

Madhurig: Created page with "'''Title of script: Overview of GChemPaint''' '''Author: Madhuri Ganpathi''' {| border=1 || '''Visual Cue''' || '''Narration''' |- ||'''Slide Number 1''' '''Title Slide..."

2014-10-27T10:21:31Z

Created page with "'''Title of script: Overview of GChemPaint''' '''Author: Madhuri Ganpathi''' {| border=1 || '''Visual Cue''' || '''Narration''' |- ||'''Slide Number 1''' '''Title Slide..."

New page

'''Title of script: Overview of GChemPaint'''

'''Author: Madhuri Ganpathi'''

{| border=1
|| '''Visual Cue'''
|| '''Narration'''
|-
||'''Slide Number 1'''

'''Title Slide'''
|| Hello everyone.

Welcome to this tutorial on '''Overview of GChemPaint'''.
|-
||'''Slide Number 2+3'''

'''Learning Objectives'''
|| In this tutorial, we will learn to,

* Install '''GChemPaint''' along with all its utility files

* View menubar of '''GChemPaint''' and its utility softwares

* Use '''GChemPaint''' User Manual

* Use different '''GChemPaint''' utility softwares

We will also

* See the relation between '''GChemPaint''' and '''Jmol Application'''

* Take a quick look at various structures that can be drawn using '''GChemPaint'''
|-
||'''Slide Number 4'''

'''System Requirement'''
||For this tutorial I am using

* '''Ubuntu Linux OS''' version 12.04.

* '''GChemPaint''' version 0.12.10.

* '''GChemCalc''' version 0.12.10.

* '''GChem3D''' version 0.12.10.

* '''GChemTable''' version 0.12.10.

* '''Jmol Application''' version 12.2.2

|-
||'''Slide Number 5

'''Pre-requisites'''
|| To practise this tutorial, you will require

* Knowledge of high school Chemistry and

* Internet connectivity

|-
||'''Slide Number 6'''

'''About GChemPaint'''
|| Let's see what is '''GChemPaint'''.

* '''GChemPaint''' is a 2D chemical structure editor for '''Gnome-2''' desktop.

* It has '''GChemCalc''', '''GChem3D''' and '''GChemTable''' as its utility features.

* '''GChemPaint''' is available only on '''Linux OS'''.

* '''GChemPaint''' is included in the '''Gnome Chemistry Utils'''

|-
||'''Slide Number 7'''

'''Installation on Ubuntu Linux'''
||'''GChemPaint''' and all its utility files can be installed on '''Ubuntu Linux OS''' using '''Synaptic Package Manager'''.

For more information on '''Synaptic Package Manager''' please refer to the '''Linux''' series on our website.
|-
||'''Slide Number 8'''

'''Installation on Ubuntu Linux'''
||Please check the following utilities in the '''Synaptic Package Manager''' window.

* gchempaint,

* libgcu0,

* gcu-plugin,

* libgcu-dbg and

* gcu-bin

|-
||
||Now we will move on to the '''User Manual'''.
|-
||'''Slide Number 9'''
'''User Manual'''

Point to the link.
||'''User Manual''' briefly explains how to use '''GChemPaint''' and its utilities.

'''GChemPaint''' provides '''User Manual''' at this link.

'''http://gchemutils.nongnu.org/paint/manual/index.html'''
|-
||Point to '''Ubuntu Desktop''' menubar.
||The menubars of '''GChemPaint''' and all its utilities will appear on the '''Ubuntu Desktop''' menubar.
|-
||Point to the tool box.

||This is the tool box of '''GChemPaint'''.

|-
||Point to the tools of the tool box.
|| We will use various tools to draw different structures.
|-
||Point to Current element drop down arrow button.
||Tool box has an inbuilt '''Periodic Table''' to replace the '''Current element'''.
|-
||Point to various structures.
||Here are different structures drawn using the various tools in the tool box.
|-
||Point to the tools.
||During the course of the series, I will explain how to draw various structures using these tools.
|-

||
|| Now I will discuss about the utility software of '''GChemPaint'''.
|-
||Point to '''Chemical Calculator''' window.

|| This is '''Chemical Calculator''' window.

|-
||Type “C3H8” in the search bar >>press enter.
|| I will type “C3H8” in the search bar and press Enter.
|-
||Move the cursor on the window.
||This window shows details and '''Isotropic pattern''' of '''Propane'''.
|-
||Move the cursor on the window.
||This is '''GChem3D''' window.

It shows 3D models of 2D structures drawn in '''GChemPaint'''.
|-
||Move the cursor on the window.
||The new version of '''GChemPaint ''' has improved 3D rendering of the molecules.
|-
||Move the cursor on the window.
||This is '''GChemTable''' window.

It has the '''Periodic Table''' of elements and their trends.

There is one more unique feature in '''GChemPaint'''.

2D structures drawn in '''GChemPaint''' can be viewed in '''Jmol Application''' as 3D structures.

|-
||Point to .mol format.
||To view structures in 3D, GChemPaint files have to be saved in .mol format.
|-
||'''Slide Number 10'''

'''About Jmol Application'''
|| A brief introduction to '''Jmol Application'''.

It is,

* Free and open source '''Molecular Viewer'''.

* Used to create and view 3 dimensional models of chemical structures.

* Used to view secondary structures of '''proteins''' and '''macromolecules'''.

For more details, please refer to the '''Jmol Application''' series on our website.
|-
||'''Slide Number 11'''

||In the '''GChemPaint''' series, we will learn exciting features like -

* Use Templates and Residues

* Form molecules and bonds

* Aromatic Molecular structures

* Orbital overlap

* Resonance Structures

* View 3D structures

* View Periodic Table trends

|-
||
||Let's summarize.

|-
| '''Slide Number 12'''

'''Summary'''
||In this tutorial we have learnt to,

* Install '''GChemPaint''' along with all its utility files.

* View menubar of '''GChemPaint''' and its utility softwares

* Use the '''GChemPaint''' User Manual

* Use the '''GChemPaint''' utility softwares

* And about the relation between '''GChemPaint''' and '''Jmol Application'''.

We also had a quick look at different structures that can be drawn in '''GChemPaint'''.
|-
||'''Slide Number 13'''

'''Acknowledgement'''
||This video summarizes the Spoken Tutorial project

If you do not have good bandwidth, you can download and watch it.
|-
||'''Slide Number 14'''
||The Spoken Tutorial Team:

Conducts workshops using spoken tutorials

Gives certificates to those who pass an online test

For more details, please write to

'''contact@spoken-tutorial.org'''
|-
||Slide number 15
||Spoken Tutorial Project is a part of the Talk to a Teacher project

It is supported by the National Mission on Education through ICT, MHRD, Government of India

More information on this Mission is available at '''http://spoken-tutorial.org/NMEICT-Intro ]'''

This is '''Madhuri Ganpathi''' from '''IIT Bombay''' signing off. Thank you for joining.
|-
|}

@@ Line 22: / Line 22: @@
 * Install '''GChemPaint''' along with all its utility files
-* View menubar of '''GChemPaint''' and its  utility softwares
+* View menubar of '''GChemPaint''' and its utility softwares
 * Use '''GChemPaint''' User Manual
@@ Line 32: / Line 32: @@
 * See the relation between '''GChemPaint''' and '''Jmol Application'''
-* Take a quick look at various  structures that can be drawn using '''GChemPaint'''
+* Take a quick look at various  structures that can be drawn using '''GChemPaint'''.
 |-
 ||'''Slide Number 4'''
@@ Line 59: / Line 59: @@
 * Knowledge of high school Chemistry and
-* Internet connectivity
+* Internet connectivity.
 |-
@@ Line 65: / Line 65: @@
 '''About GChemPaint'''
-|| Let's  see what is '''GChemPaint'''.
+|| Let's see what is '''GChemPaint'''?
 * '''GChemPaint''' is a 2D chemical structure editor for  '''Gnome-2''' desktop.
@@ Line 145: / Line 145: @@
 |-
 ||Move the cursor on the window.
-||This window shows details and '''Isotropic pattern''' of '''Propane'''.
+||This window shows details and '''Isotopic pattern''' of '''Propane'''.
 |-
 ||Move the cursor on the window.
@@ Line 181: / Line 181: @@
 * Used to view secondary structures of '''proteins''' and '''macromolecules'''.
-For more details, please refer to the '''Jmol Application''' series on our website.
+For details, please refer to the '''Jmol Application''' series on our website.
 |-
 ||'''Slide Number 11'''

@@ Line 142: / Line 142: @@
 |-
 ||Type  “C3H8” in the search bar >>press enter.
-|| I will type “C3H8” in the search bar and press Enter.
+|| I will type '''“C3H8”''' in the search bar and press '''Enter'''.
 |-
 ||Move the cursor on the window.
@@ Line 166: / Line 166: @@
 |-
 ||Point to .mol format.
-||To view structures in 3D, GChemPaint files have to be saved in .mol format.
+||To view structures in 3D, '''GChemPaint''' files have to be saved in '''.mol''' format.
 |-
 ||'''Slide Number 10'''
@@ Line 187: / Line 187: @@
 ||In the '''GChemPaint''' series, we will learn exciting features like -
-*  Use Templates and Residues
+*  Use '''Templates''' and '''Residues'''
 *  Form molecules and bonds
-*  Aromatic Molecular structures
+*  '''Aromatic Molecular structures'''
-*  Orbital overlap
+*  '''Orbital overlap'''
-*  Resonance Structures
+*  '''Resonance Structures'''
 *  View 3D structures
-*  View Periodic Table trends
+*  View '''Periodic Table''' trends
 |-

@@ Line 94: / Line 94: @@
 * gcu-plugin,
-* libgcu-dbg and
+* libgcu-dbg
 * gcu-bin
@@ Line 158: / Line 158: @@
 ||This is '''GChemTable''' window.
-It has the '''Periodic Table''' of elements and their trends.
+It has '''Periodic Table''' of elements and their trends.
 There is one more unique feature in '''GChemPaint'''.
@@ Line 215: / Line 215: @@
 * View menubar of '''GChemPaint''' and its  utility softwares
-* Use the '''GChemPaint''' User Manual
+* Use  '''GChemPaint''' User Manual
-*  Use the '''GChemPaint''' utility softwares
+* Use '''GChemPaint''' utility softwares
 * And about the relation between '''GChemPaint''' and '''Jmol Application'''.