GChemPaint/C2/Formation-of-Bonds/English - Revision history

Madhurig at 12:22, 18 December 2013

2013-12-18T12:22:42Z

Madhurig at 12:20, 18 December 2013

2013-12-18T12:20:35Z

Madhurig at 07:47, 19 July 2013

2013-07-19T07:47:18Z

Madhurig at 07:40, 19 July 2013

2013-07-19T07:40:21Z

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Madhurig at 07:16, 19 July 2013

2013-07-19T07:16:49Z

Madhurig at 09:46, 4 July 2013

2013-07-04T09:46:43Z

Madhurig at 06:52, 4 July 2013

2013-07-04T06:52:12Z

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Madhurig at 06:38, 4 July 2013

2013-07-04T06:38:01Z

Madhurig at 06:30, 4 July 2013

2013-07-04T06:30:41Z

Madhurig at 06:07, 4 July 2013

2013-07-04T06:07:16Z

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 Key words: Video tutorial, Add bonds to the existing bond, Orient bonds, Add Stereochemical bonds and Inverse wedge hashes
+GChemPaint tools- Add a bond or change the multiplicity of an existing one, Add a wedge bond, Add a hash bond, Add a squiggle bond and  Add a fore bond.
 {|border=1

← Older revision		Revision as of 12:20, 18 December 2013
Line 1:		Line 1:
		+	Title of the tutorial: Formation-of-Bonds
		+
		+	Author: Madhuri Ganapathi
		+
		+	Key words: Video tutorial, Add bonds to the existing bond, Orient bonds, Add Stereochemical bonds and Inverse wedge hashes
		+
		+
	{\|border=1		{\|border=1
	!'''Visual Cue'''		!'''Visual Cue'''

@@ Line 110: / Line 110: @@
 Click below the structures.
 |-
-||Enter the names in green boxes.
+||Enter the names.
 ||Enter the names of the structures as  '''Ethane, Ethene''' and '''Ethyne'''.
 |-
@@ Line 125: / Line 125: @@
 Click on '''Select one or more objects''' tool and drag the structures.
 |-
-||Slide Number 5
+||'''Slide Number 5'''
 Show slide on  '''Tetrahedral Methane''' structure.
 ||Here is a slide for the '''Tetrahedral Methane''' structure.
-All the bond lengths are equal to 1.09 angstrom.
+All the bond lengths are equal to 1.09 '''angstrom'''.
 |-
-||Tetrahedral structure(animation)
+||'''Tetrahedral structure'''(animation)
-||In  Tetrahedral methane structure,
+||In  '''Tetrahedral methane''' structure,
 all the bond angles are equal to 109.5 degree.
@@ Line 161: / Line 162: @@
 ||Let's attach hydrogen atoms at the ends.
 |-
-||Press capital H >>a '''Submenu''' opens select H
+||Press capital H >>a '''Submenu''' opens select '''H'''
 ||To attach '''Hydrogen''' atoms to the ends,
@@ Line 181: / Line 182: @@
 |-
 ||Point to the '''Stereochemical''' bonds-
-'''Add a hash bond''',
+* '''Add a wedge bond''',
-'''Add a squiggle bond''' and
+* '''Add a hash bond''',
-'''Add a fore bond.'''
+* '''Add a squiggle bond''' and
 ||'''Stereochemical''' bonds available in the tool box are,
-'''Add a hash bond,'''
+* '''Add a wedge bond,'''
-'''Add a squiggle bond''' and
+* '''Add a squiggle bond''' and
-'''Add a fore bond'''.
+* '''Add a fore bond'''.
 |-
 ||
@@ Line 210: / Line 213: @@
 Observe the changes.
 |-
-||Click on Add a hash bond>>click on the Display area.
+||Click on '''Add a hash bond'''>>click on the Display area.
-||Click on Add a hash bond and
+||Click on '''Add a hash bond''' and
-then click on the Display area.
+then click on the '''Display area'''.
 |-
 ||
-||Now I will explain about Invert wedge hashes.
+||Now I will explain about '''Invert wedge hashes'''.
 |-
 ||Go '''Edit''' menu, navigate to '''Preferences''' and click on it>> '''GChemPaint''' '''Preferences''' window opens.
@@ Line 279: / Line 282: @@
 '''Assignment'''
-||''' Assignment'''
+||As an assignment,
 * Convert Propane to Propyne

@@ Line 13: / Line 13: @@
 '''Learning Objectives'''
-||In this tutorial, we will learn
+||In this tutorial, we will learn to,
 * Add bonds to the existing bond
@@ Line 50: / Line 50: @@
 ||Let's copy '''Ethane''' structure and paste it twice on the '''Display area'''.
 |-
-||Click on  '''Select one or more objects''' tool to select '''Ethane.'''
+||Click on  '''Select one or more objects''' tool click on '''Ethane''' to select
-||Click on  '''Select one or more objects''' tool to select '''Ethane''' structure.
+||Click on  '''Select one or more objects''' tool  click on '''Ethane''' structure to select it.
 |-
 ||Press '''CTRL +C''' to copy  the structure
-Press '''CTRL + V''' to paste the copied structure
+Press '''CTRL + V''' to paste the structures.
-||Press '''CTRL +C''' to copy  the structure.
+||Press '''CTRL +C''' to copy  the structure and
-Press '''CTRL + V''' to paste the copied structure
+Press '''CTRL + V''' to paste the structures.
 Observe that two structures overlap each other.
@@ Line 71: / Line 71: @@
 |-
 ||
-||Let's first convert the single bond to a double bond.
+||Let's first convert single bond to a double bond.
 |-
-||Click on '''Add a bond or change the multiplicity of existing one''' tool.
+||Click on '''Add a bond or change the multiplicity of an existing one''' tool.
-||Click on '''Add a bond or change the multiplicity of existing one''' tool.
+||Click on '''Add a bond or change the multiplicity of an existing one''' tool.
 |-
 ||Click on the existing bond of the second '''Ethane''' structure.
@@ Line 104: / Line 104: @@
 |-
 ||Click on '''Add or modify a text''' tool >>Click below the structures.
-||Let's name the structures.
+||Let's write the names of the structures.
 Click on '''Add or modify a text''' tool
@@ Line 111: / Line 111: @@
 |-
 ||Enter the names in green boxes.
-||Enter the names of the structures as  '''Ethane, Ethene''' and '''Ethyne'''  in the green boxes.
+||Enter the names of the structures as  '''Ethane, Ethene''' and '''Ethyne'''.
 |-
 ||Slide Number 5

@@ Line 143: / Line 143: @@
 ||Press capital H >>a '''Submenu''' opens select H
-To attach hydrogen atoms to the ends,
+To attach '''Hydrogen''' atoms to the ends,
-||Press capital H.
+||Press capital '''H.'''
-A submenu opens in which we will select H.
+A submenu opens in which we will select '''H'''.
-Observe that Hydrogen atom appears in the tool box.
+Observe that '''Hydrogen''' atom appears in the tool box.
 |-
 ||Click on '''Add or modify an atom''' tool
@@ Line 155: / Line 155: @@
 ||Click on '''Add or modify an atom''' tool.
-Click on all the positions to add hydrogens.
+Click on all the positions to add '''hydrogens'''.
 |-
 ||
@@ Line 178: / Line 178: @@
 |-
 ||
-||Let's use Add a wedge bond to convert Ethane to a  stereochemical structure.
+||Let's use Add a wedge bond to convert Ethane to a  "Stereochemical"
 |-
 ||Click on  '''Add a wedge bond'''.
@@ Line 202: / Line 203: @@
 |-
 ||Point to the structure.
-||If set, the wedge hashes bonds will follow the usual convention.
+||If set, the '''wedge hashes''' bonds will follow the usual convention.
 Narrow end is at the start of the bond(centre of the structure) and broad end at the other end.
@@ Line 208: / Line 209: @@
 This helps to visualize the bond correctly.
-Default convention in GChemPaint is inverse, because it is more consistent with perspective rules.
+Default convention in '''GChemPaint''' is inverse, because it is more consistent with perspective rules.
 |-
 ||
@@ Line 264: / Line 265: @@
 * Draw Propane and butane structures and
-*Show the stereochemical bonds.
+* Show the stereochemical bonds.
 Output of the assignment should look like this.

@@ Line 4: / Line 4: @@
 |-
 ||'''Slide Number 1'''
 Title Slide
 ||Hello everyone.
 Welcome the tutorial on Formation of bonds in GChemPaint.
 |-
-||Slide Number 2
+||'''Slide Number''' 2
 Learning Objectives
 ||In this tutorial, we will learn
 Add bonds to the existing bond
-Orient the bonds
+* Add bonds to the existing bond
 Add Stereochemical bonds
-Inverse wedge hashes
+* Orient the bonds
 |-
-||Slide Number 3
+||'''Slide Number 3'''
 System Requirement
 ||Here I am using
-GChemPaint version 0.12.10
+'''Ubuntu Linux''' OS version. 12.04
 |-
-||Slide Number 4
+||'''Slide Number 4'''
-||Pre-requisites
-To follow this tutorial you should be familiar with,
+'''Pre-requisites'''
 If not, for relevant tutorials,  please visit our website.
 |-
-||Switch to GchemPaint application.
+||Switch to ''' GChemPaint''' application.
-||I have opened a new GChemPaint application with Ethane structure.
+||I have opened a new '''GChemPaint''' application with '''Ethane''' structure.
 |-
 ||
-||Let's learn to convert saturated hydrocarbon to usaturated hydrocarbons.
+||Let's learn to convert '''Saturated Hydrocarbons''' to '''Unsaturated Hydrocarbons'''.
 |-
 ||Point to the Ethane structure.

@@ Line 202: / Line 202: @@
 Let's summarise.
 |-
-||
+||Slide Number 6

@@ Line 134: / Line 134: @@
 ||
 ||Let's now add stereochemical bonds to Ethane structure.
 |-
 ||