GChemPaint/C2/Edit-Preferences-Templates-and-Residues/English-timed - Revision history

Pratik kamble at 12:15, 27 March 2017

2017-03-27T12:15:08Z

Pratik kamble at 11:52, 7 March 2017

2017-03-07T11:52:07Z

Pratik kamble at 11:49, 7 March 2017

2017-03-07T11:49:33Z

Pratik kamble at 11:05, 11 May 2015

2015-05-11T11:05:51Z

Sandhya.np14 at 12:05, 10 February 2015

2015-02-10T12:05:09Z

Sandhya.np14 at 12:02, 10 February 2015

2015-02-10T12:02:38Z

PoojaMoolya at 11:26, 12 August 2014

2014-08-12T11:26:57Z

Gaurav at 10:16, 8 August 2014

2014-08-08T10:16:52Z

Gaurav: Created page with ' {|border =1 |'''Time''' |'''Narration''' |- |00:01 |Hello everyone. Welcome to the tutorial on '''Edit Preferences, Templates''' and '''Residues''' in '''GChemPaint'''. |- |…'

2014-08-05T12:17:48Z

Created page with ' {|border =1 |'''Time''' |'''Narration''' |- |00:01 |Hello everyone. Welcome to the tutorial on '''Edit Preferences, Templates''' and '''Residues''' in '''GChemPaint'''. |- |…'

New page

{|border =1
|'''Time'''
|'''Narration'''

|-
|00:01
|Hello everyone. Welcome to the tutorial on '''Edit Preferences, Templates''' and '''Residues''' in '''GChemPaint'''.

|-
|00:10
|In this tutorial, we will learn to

|-
|00:13
|* Edit Preferences

|-
|00:15
|* Manage Templates

|-
|00:17
|* Select and use ready Templates

|-
|00:20
|* Add a New Template

|-
|00:24
|We will also learn

|-
|00:26
|* The uses of Residues and

|-
|00:28
|* To edit Residues.

|-
|00:32
|Here I am using
'''Ubuntu Linux''' OS version. 12.04
'''GChemPaint''' version 0.12.10

|-
|00:44
|To follow this tutorial, you should be familiar with,

|-
|00:49
|'''GChemPaint''' chemical structure editor.

|-
|00:53
|If not, for relevant tutorials, please visit our website.

|-
|00:59
|I have already opened a new '''GChemPaint''' application.

|-
|01:03
|Let's begin the tutorial by editing '''Preferences.'''

|-
|01:07
|Go to '''Edit''' menu, navigate to '''Preferences''' and click on it.

|-
|01:13
|'''GChemPaint Preferences''' window opens.

|-
|01:16
|The first field, '''Default Compression Level For GChemPaint Files''', is used when saving files.

|-
|01:24
|By default, it is zero.

|-
|01:28
|If not zero, the file will be compressed using '''gzip.'''

|-
|01:33
|I will cover '''Invert wedge hashes''' in an another tutorial.

|-
|01:40
|In ''' GchemPaint,''' each document has an associated theme.

|-
|01:46
|Let's retain the '''Default Theme''' as ''' GChemPaint.'''

|-
|01:50
|Now, I will explain about ''' Arrows''' in detail, under '''Themes''' section.

|-
|01:58
|Observe the different types of arrows on the tool box

|-
|02:02
|* Add an arrow for an irreversible reaction.

|-
|02:06
|* Add a pair of Arrows for a reversible reaction.

|-
|02:10
|* Add an arrow for a retrosynthesis step.

|-
|02:14
|* Add a double headed arrow to represent mesomery.

|-
|02:19
|Let's add these 4 arrows to the ''' Display area.'''

|-
|02:24
|Click on '''Add an arrow for an irreversible reaction''' tool,

|-
|02:28
|Then click on ''' Display area.'''

|-
|02:31
|Likewise I will add other types of arrows to the Display area.

|-
|02:41
|Select '''Arrows''' from the '''Themes''' field in the '''Preferences''' dialog box.

|-
|02:47
|A '''Contextual''' menu opens.

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|02:50
|Here we can increase or decrease '''Length''', '''Width''' and '''Distance''' of the arrows.

|-
|02:57
|Click on up or down arrow triangles with the mouse.

|-
|03:02
|And Observe the changes in the arrows in the '''Display area.'''

|-
|03:10
|Now let's learn about Arrow heads.

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|03:14
|The default values of A, B and C are displayed here.

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|03:21
|The A, B and C parameters help to vary the shape of the arrow heads.

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|03:28
|Increase or decrease each one and observe the changes in the arrow heads.

|-
|03:38
|let's Click on '''Close''' button to close the window

|-
|03:42
|Let's clear the '''Display area.'''

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|03:46
|Press '''CTRL +A''' to select all objects.

|-
|03:49
|Go to '''Edit''' menu, click on '''Clear.'''

|-
|03:53
|Next, let's learn how to manage Templates.

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|03:58
|Click on '''Use or manage templates''' tool.

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|04:01
|The property dialog box opens below.

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|04:05
|'''Property''' dialog box contains '''Templates''' with a drop down list.

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|04:10
|List contains '''Amino acids, Aromatic hydrocarbons, Nucleic bases,''' '''Nucleosides''' and '''Saccharides.'''

|-
|04:19
|Each item has a '''Submenu.'''

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|04:23
|Let's select '''Aromatic Hydrocarbons''' and click on '''Benzene''' from the '''Submenu.'''

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|04:31
|'''Benzene''' structure is displayed on the property page.

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|04:35
|Now click on the '''Display area''' to display '''Benzene''' structure.

|-
|04:40
|Likewise let's select '''Naphtalene''' structure and click on the '''Display area.'''

|-
|04:49
|Select and place other structures on the '''Display area''', on your own.

|-
|04:55
|Let's save the file now.

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|04:57
|Click on '''Save the current file''' icon on the toolbar.

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|05:01
|'''Save as''' dialog box opens

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|05:04
|Enter the file name as '''Benzene''' click on '''Save''' button.

|-
|05:10
|Now let's learn to add a '''New template''' to the existing Template list.

|-
|05:16
|Click on '''Open a file''' icon from the toolbar.

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|05:20
|A window with files and folders opens.

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|05:24
|Select the file named “Hexane” from the list.

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|05:27
|Click on '''Open''' button.

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|05:31
|Click on '''Add''' button from the template's property page.

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|05:35
|'''New template''' property page opens.

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|05:38
|Property page has two fields – '''Name''' and '''Category.'''

|-
|05:42
|'''Category''' field has a drop down list.

|-
|05:47
|We can select from the list or add our own category.

|-
|05:52
|Let's add a new Category, by typing '''Hydrocarbons''' in the text field.

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|05:58
|In the '''Name''' field, enter the name of the compound as “Hexane”.

|-
|06:03
|Click on the '''Hexane''' structure on the '''Display area.'''

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|06:07
|It will be displayed on the '''New template''' property page.

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|06:12
|Click on '''Ok''' button.

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|06:15
|Now, click on '''Templates''' drop-down.

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|06:19
|Select '''Hydrocarbons''' category.

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|06:22
|Observe that '''Hexane''' structure is added to the '''Template''' list.

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|06:27
|Add '''Octane''' structure to '''Hydrocarbons''' category, on your own.

|-
|06:32
|Let's close the “hexane” file.

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|06:35
|Go to '''File''' menu, select '''Close''' to close the file.

|-
|06:41
|Click on '''Select one or more objects''' tool to close the '''Templates''' property page.

|-
|06:47
|Now, let's learn about '''Residues.'''

|-
|06:51
|Residues are used to,

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|06:53
|* Find the nature of functional group attached to carbon chain.

|-
|06:58
|* Know the structure of functional group.

|-
|07:01
|* Add a new functional group to the database.

|-
|07:05
|Go to '''Tools''' menu click on '''Edit residues.'''

|-
|07:09
|'''Residues''' window opens.

|-
|07:12
|It has three buttons - '''New, Save''' and '''Delete.'''

|-
|07:18
|'''New''' button has a drop down list.

|-
|07:21
|Select '''n-Pr''' for from the list.

|-
|07:25
|'''Identity''' tab shows '''Symbol''' and '''Name''' of the selected residue.

|-
|07:32
|'''Formula''' tab shows the Skeletal structure of the selected residue.

|-
|07:38
|Likewise, let's select '''s-Bu''' for Secondary Butyl.

|-
|07:44
|Observe the '''Symbol, Name''' and '''Skeletal''' structure of the selected residue.

|-
|07:52
|Let's now add a new residue - '''Hydroxy''' group.

|-
|07:57
|To add a new residue, click on '''New''' button.

|-
|08:02
|In the '''Symbol''' field type ''' O-H.'''

|-
|08:06
|Name it as '''Hydroxy'''.

|-
|08:09
|Click on the '''Formula''' tab.

|-
|08:11
|You will see a bulleted bond.

|-
|08:14
|Place the cursor near the bond and press capital '''O'''.

|-
|08:19
|A '''Submenu''' opens with '''O''' and '''Os'''. Select O

|-
|08:24
|'''O-H''' group attaches to the bond.

|-
|08:28
|Click on '''Save''' button.

|-
|08:31
|Now, click on '''New''' button to view the list.

|-
|08:35
|Observe that '''O-H''' residue is added to the list.

|-
|08:40
|Let's click on '''Close''' button to close the window

|-
|08:44
|With this we come to the end of this tutorial.

|-
|08:48
|Let's summarise

|-
|08:50
|In this tutorial, we have learnt to

|-
|08:53
|* Edit Preferences

|-
|08:55
|* Manage Templates

|-
|08:56
|* Select and use ready Templates

|-
|08:59
|* Add a New Template

|-
|09:01
|* Uses of Residues and To edit Residues.

|-
|09:07
|As an assignment
* Select and use Saccharides from Templates list.

|-
|09:12
|* Explore other residues.

|-
|09:16
|Watch the video available at this URL. '''http://spoken-tutorial.org/What_is_a_Spoken_Tutorial'''

|-
|09:20
|It summarises the Spoken Tutorial project

|-
|09:24
|If you do not have good bandwidth, you can download and watch it

|-
|09:29
|The Spoken Tutorial Project Team Conducts workshops using spoken tutorials

|-
|09:33
|Gives certificates to those who pass an online test

|-
|09:37
|For more details, please write to '''contact@spoken-tutorial.org'''

|-
|09:45
|Spoken Tutorial Project is a part of the Talk to a Teacher project

|-
|09:50
|It is supported by the National Mission on Education through ICT, MHRD, Government of India

|-
|09:57
|More information on this Mission is available at this link ['''http://spoken-tutorial.org/NMEICT-Intro ]'''

|-
|10:04
|This is '''Madhuri Ganpathi''' from '''IIT Bombay''' signing off. Thank you for joining.

@@ Line 1: / Line 1: @@
-  Title of the tutorial: Edit-Preferences-Templates-and-Residues
+  {|border =1
-−
-Author: Madhuri Ganapathi
-−
-Key words: Edit Preferences, Manage Templates, Add New Templates, Residues, edit Residues,Video tutorial.
-−
-GChemPaint tools- Add an arrow for an irreversible reaction, Add a pair of Arrows for a reversible reaction, Add an arrow for a retrosynthesis step, Add a double headed arrow to represent mesomery.
-−
 {|border =1
 |'''Time'''
 |'''Narration'''
@@ Line 337: / Line 329: @@
 |-
 |06:32
-|Let's  close the “hexane” file.
+|Let's  close the '''hexane''' file.
 |-

← Older revision		Revision as of 11:26, 12 August 2014
Line 1:		Line 1:
−		+	Title of the tutorial: Edit-Preferences-Templates-and-Residues
		+
		+	Author: Madhuri Ganapathi
		+
		+	Key words: Edit Preferences, Manage Templates, Add New Templates, Residues, edit Residues,Video tutorial.
		+
		+	GChemPaint tools- Add an arrow for an irreversible reaction, Add a pair of Arrows for a reversible reaction, Add an arrow for a retrosynthesis step, Add a double headed arrow to represent mesomery.

	{\|border =1		{\|border =1

@@ Line 25: / Line 25: @@
 |-
 |00:20
-|* Add a New Template
+| Add a New Template
 |-
@@ Line 109: / Line 109: @@
 |-
 |02:02
-|* Add an arrow for an irreversible reaction.
+| Add an arrow for an irreversible reaction.
 |-
 |02:06
-|* Add a pair of arrows for a reversible reaction.
+| Add a pair of arrows for a reversible reaction.
 |-
 |02:10
-|* Add an arrow for a retrosynthesis step.
+| Add an arrow for a retrosynthesis step.
 |-
 |02:14
-|* Add a double headed arrow to represent mesomery.
+| Add a double headed arrow to represent mesomery.
 |-

@@ Line 349: / Line 349: @@
 |-
 |06:53
-|* Find the nature of functional group attached to carbon chain.
+|Find the nature of functional group attached to carbon chain.
 |-
 |06:58
-|* Know the structure of  functional group.
+|Know the structure of  functional group.
 |-
 |07:01
-|* Add a new functional group to the database.
+| Add a new functional group to the database.
 |-
@@ Line 461: / Line 461: @@
 |-
 |08:53
-|* Edit Preferences
+| Edit Preferences
 |-
 |08:55
-|* Manage Templates
+|Manage Templates
 |-
 |08:56
-|* Select and use ready Templates
+| Select and use ready Templates
 |-
 |08:59
-|* Add a New Template
+| Add a New Template
 |-
 |09:01
-|* Uses of Residues and To edit Residues.
+| Uses of Residues and To edit Residues.
 |-
@@ Line 485: / Line 485: @@
 |-
 |09:12
-|* Explore other residues.
+| Explore other residues.
 |-

@@ Line 13: / Line 13: @@
 |-
 |00:13
-|* Edit Preferences
+|Edit Preferences
 |-
 |00:15
-|* Manage Templates
+|Manage Templates
 |-
 |00:17
-|* Select and use ready Templates
+|Select and use ready Templates
 |-
@@ Line 33: / Line 33: @@
 |-
 |00:26
-|* The uses of Residues and
+|The uses of Residues and
 |-
 |00:28
-|* To edit Residues.
+|To edit Residues.
 |-

@@ Line 57: / Line 57: @@
 |-
 |00:44
-|To follow this tutorial, you should be familiar with,
+|To follow this tutorial, you should be familiar with
 |-
@@ Line 465: / Line 465: @@
 |-
 |08:50
-|In this tutorial, we have learnt to
+|In this tutorial, we have learnt to:
 |-

@@ Line 17: / Line 17: @@
 |-
 |00:10
-|In this tutorial, we will learn to
+|In this tutorial, we will learn to:
 |-
@@ Line 37: / Line 37: @@
 |-
 |00:24
-|We will also learn
+|We will also learn:
 |-
@@ Line 49: / Line 49: @@
 |-
 |00:31
-|Here I am using '''Ubuntu Linux''' OS version. 12.04
+|Here I am using '''Ubuntu Linux''' OS version. 12.04,
 |-
 |00:38
-|'''GChemPaint''' version 0.12.10
+|'''GChemPaint''' version 0.12.10.
 |-
@@ Line 113: / Line 113: @@
 |-
 |01:58
-|Observe the different types of  arrows on the tool box
+|Observe the different types of  arrows on the tool box.
 |-
@@ Line 121: / Line 121: @@
 |-
 |02:06
-|* Add a pair of Arrows for a reversible reaction.
+|* Add a pair of arrows for a reversible reaction.
 |-
@@ Line 137: / Line 137: @@
 |-
 |02:24
-|Click on  '''Add an arrow for an irreversible reaction'''  tool,
+|Click on  '''Add an arrow for an irreversible reaction'''  tool.
 |-
@@ Line 145: / Line 145: @@
 |-
 |02:31
-|Likewise I will add  other types of arrows to the Display area.
+|Likewise, I will add  other types of arrows to the Display area.
 |-
@@ Line 185: / Line 185: @@
 |-
 |03:38
-|Let's Click on '''Close''' button to close the window
+|Let's click on '''Close''' button, to close the window.
 |-
@@ Line 193: / Line 193: @@
 |-
 |03:46
-|Press '''CTRL +A''' to select all objects.
+|Press '''Ctrl +A''' to select all objects.
 |-
@@ Line 233: / Line 233: @@
 |-
 |04:35
-|Now  click on the '''Display area''' to display '''Benzene''' structure.
+|Now click on the '''Display area''' to display '''Benzene''' structure.
 |-
@@ Line 253: / Line 253: @@
 |-
 |05:01
-|'''Save as''' dialog box opens
+|'''Save as''' dialog box opens.
 |-
@@ Line 317: / Line 317: @@
 |-
 |06:12
-|Click on '''Ok''' button.
+|Click on '''OK''' button.
 |-
@@ Line 369: / Line 369: @@
 |-
 |07:04
-|Go to '''Tools''' menu  click on '''Edit residues.'''
+|Go to '''Tools''' menu, click on '''Edit residues.'''
 |-
@@ Line 405: / Line 405: @@
 |-
 |07:52
-|Let's  now add a new residue - '''Hydroxy''' group.
+|Let's now add a new residue - '''Hydroxy''' group.
 |-
@@ Line 433: / Line 433: @@
 |-
 |08:19
-|A '''Submenu''' opens with '''O''' and '''Os'''. Select O
+|A '''Submenu''' opens with '''O''' and '''Os'''. Select 'O'.
 |-
@@ Line 453: / Line 453: @@
 |-
 |08:40
-|Let's click on '''Close''' button to close the window
+|Let's click on '''Close''' button to close the window.
 |-
@@ Line 461: / Line 461: @@
 |-
 |08:48
-|Let's summarise
+|Let's summarize.
 |-
@@ Line 489: / Line 489: @@
 |-
 |09:07
-|As an assignment  Select and use Saccharides from Templates list.
+|As an assignment: * Select and use Saccharides from Templates list.
 |-
@@ Line 501: / Line 501: @@
 |-
 |09:20
-|It summarises the Spoken Tutorial project
+|It summarizes the Spoken Tutorial project.
 |-
 |09:24
-|If you do not have good bandwidth, you can download and watch it
+|If you do not have good bandwidth, you can download and watch it.
 |-
 |09:29
-|The Spoken Tutorial Project Team Conducts workshops using spoken tutorials
+|The Spoken Tutorial Project Team: Conducts workshops using spoken tutorials.
 |-
 |09:33
-|Gives certificates to those who pass an online test
+|Gives certificates to those who pass an online test.
 |-
 |09:37
-|For more details, please write to '''contact@spoken-tutorial.org'''
+|For more details, please write to '''contact@spoken-tutorial.org'''.
 |-
 |09:45
-|Spoken Tutorial Project is a part of the Talk to a Teacher project
+|Spoken Tutorial Project is a part of the Talk to a Teacher project.
 |-
 |09:50
-|It is supported by the National Mission on Education through ICT, MHRD, Government of India
+|It is supported by the National Mission on Education through ICT, MHRD, Government of India.
 |-