Nancyvarkey at 08:34, 6 May 2016

2016-05-06T08:34:33Z

Bellatony911 at 09:30, 3 May 2016

2016-05-03T09:30:32Z

Bellatony911: Created page with " {| style="border-spacing:0;" | style="border:0.75pt solid #000000;padding:0.071cm;"| '''Visual Cue''' | style="border:0.75pt solid #000000;padding:0.071cm;"|..."

2016-05-03T09:13:35Z

Created page with " {| style="border-spacing:0;" | style="border:0.75pt solid #000000;padding:0.071cm;"| <center>'''Visual Cue'''</center> | style="border:0.75pt solid #000000;padding:0.071cm;"|..."

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{| style="border-spacing:0;"
| style="border:0.75pt solid #000000;padding:0.071cm;"| <center>'''Visual Cue'''</center>
| style="border:0.75pt solid #000000;padding:0.071cm;"| '''Narration'''

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| '''Slide Number 1'''

Title Slide
| style="border:0.75pt solid #000000;padding:0.071cm;"| Hello everyone.

Welcome to this tutorial on ‘Customizing Diagram Layout’.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| '''Slide 2'''

Learning Objectives
| style="border:0.75pt solid #000000;padding:0.071cm;"| In this tutorial, we will learn how to:

* Change color, shape and width of a '''Reaction line'''
* Add '''Anchor points''' to a '''Reaction line'''
* Align '''Components'''
* Show/hide '''Reaction ids'''

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| '''Slide 3 '''

Learning Objectives
| style="border:0.75pt solid #000000;padding:0.071cm;"| We will also learn how to:

* Add notes to '''Components'''
* Edit '''Protein'''
* Edit information
* And get a bird’s eye view of the diagram

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| '''Slide Number 4'''

System Requirement

| style="border:0.75pt solid #000000;padding:0.071cm;"| To record this tutorial, I am using

* '''Ubuntu Linux OS 14.04'''
* '''CellDesigner version 4.3'''
* '''Java version 1.7'''

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| '''Slide Number 5'''

| style="border:0.75pt solid #000000;padding:0.071cm;"| To follow this tutorial, learners should be familiar with:

* '''Undergraduate Biochemistry '''and
* '''CellDesigner interface.'''

If not, for relevant '''CellDesigner '''tutorials, please visit the '''Spoken Tutorial '''website.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"|
| style="border:0.75pt solid #000000;padding:0.071cm;"| Let us begin.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| '''Slide Number 6'''

Assignment for previous tutorial-

To build a Process Diagram for Methionine Biosynthesis.
| style="border:0.75pt solid #000000;padding:0.071cm;"| The assignment for one of the previous tutorials was-

To build a '''process diagram '''for '''Methionine Biosynthesis'''.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"|
| style="border:0.75pt solid #000000;padding:0.071cm;"| I am going to use that same diagram as the example for this tutorial.

And I will demonstrate how to customize it.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Switch to '''CellDesigner '''interface.
| style="border:0.75pt solid #000000;padding:0.071cm;"| Let me switch to '''CellDesigner''' interface.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Show''' '''Process Diagram on CellDesigner window.

| style="border:0.75pt solid #000000;padding:0.071cm;"| What you see here is the '''process diagram '''for '''Methionine Biosynthesis.'''

Pause the tutorial here and open the '''Methionine Biosynthesis process diagram '''that you created.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"|
| style="border:0.75pt solid #000000;padding:0.071cm;"| If you do not have a saved file, you may open from the code file provided.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| '''Slide 7'''
| style="border:0.75pt solid #000000;padding:0.071cm;"| Now, let me start customizing the '''diagram.'''

Let us go back to the''' Cell designer '''interface

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Point to a '''Reaction line'''.
| style="border:0.75pt solid #000000;padding:0.071cm;"| To start with, I will change the width and color of a '''Reaction line'''.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Select any one '''Reaction line'''.
| style="border:0.75pt solid #000000;padding:0.071cm;"| To do so, I am selecting the '''State Transition''' between''' Homoserine '''and '''Succinyl homoserine'''.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Cursor on the '''Reaction line Component''' in the main menu bar.
| style="border:0.75pt solid #000000;padding:0.071cm;"| Now, go to “'''Component'''” in the main menu bar.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Click on “'''Change color & shape'''” option
| style="border:0.75pt solid #000000;padding:0.071cm;"| And click on “'''Change color & shape'''” option.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Right-click on a Reaction line>>>Cursor on '''Change color & shape.'''
| style="border:0.75pt solid #000000;padding:0.071cm;"| Alternately, you may right-click on a '''Reaction line''' and select “'''Change color & shape'''” option.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Cursor on the dialog box
| style="border:0.75pt solid #000000;padding:0.071cm;"| A dialog box named “'''Change color & shape”''' appears on the screen.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| '''Change color & shape''' >>> Cursor on '''Line Width >> 3.0'''

| style="border:0.75pt solid #000000;padding:0.071cm;"| For a thicker '''Reaction line''', change the '''Line Width '''from 1.0 to a higher value.

I will change this to 3.0

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Cursor on '''Color panel.'''

| style="border:0.75pt solid #000000;padding:0.071cm;"| To change the color of the '''Reaction line''', go to the''' Color panel.'''

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Point to the color wheel.
| style="border:0.75pt solid #000000;padding:0.071cm;"| In the''' Color panel''' we can see a color wheel, with a pointer like handle.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Click and hold the pointer and rotate to select the color

| style="border:0.75pt solid #000000;padding:0.071cm;"| Click and hold the pointer and rotate to select the preferred color.

I will select a shade of blue.

Next, click anywhere inside the color triangle.

Now, Click and drop the small circle at the pointer.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Click on '''Apply '''>>> ''''Ok''''.

| style="border:0.75pt solid #000000;padding:0.071cm;"| After all the modifications are done, click on '''Apply''' and then on '''Ok'''.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Point to the '''Reaction line'''
| style="border:0.75pt solid #000000;padding:0.071cm;"| Observe that the '''Reaction line '''is now thicker and in shade of blue.

<<PAUSE>>

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| '''Slide Number 8'''

How to add Anchor points on the Reaction line.
| style="border:0.75pt solid #000000;padding:0.071cm;"| Next we will learn how to add '''Anchor points '''on the '''Reaction line'''.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| '''Slide Number 9'''

And why '''Anchor points '''are useful
| style="border:0.75pt solid #000000;padding:0.071cm;"| And why '''Anchor points '''are useful to-

* Turn around the '''Reaction lines'''
* Give them a proper shape
* And place them in the correct position on the '''draw area.'''

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Switch to '''CellDesigner interface'''.
| style="border:0.75pt solid #000000;padding:0.071cm;"| Lets come back to the '''CellDesigner interface'''.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Select any '''Reaction line'''.

| style="border:0.75pt solid #000000;padding:0.071cm;"| Select any '''Reaction line'''.

I will select the same '''State Transition reaction line''' between-

homoserine and succinyl homoserine.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Cursor on '''Reaction line'''
| style="border:0.75pt solid #000000;padding:0.071cm;"| On this line, using the cursor, choose the exact position where the '''Anchor point''' has to be placed.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Right-click on exact position for the '''Anchor point '''to be placed.
| style="border:0.75pt solid #000000;padding:0.071cm;"| Upon selection of the exact point, right-click and select '''Add Anchor Point.'''

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Cursor at the '''Anchor point'''
| style="border:0.75pt solid #000000;padding:0.071cm;"| You will see the newly added '''Anchor point''' at the exact chosen position on the '''Reaction line'''.

<<PAUSE>>

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"|
| style="border:0.75pt solid #000000;padding:0.071cm;"| Let me show you how '''Anchor Points '''can help to modify a Reaction line.

Let me open a new window and name it '''Anchor. '''Click''' OK'''

Now click on the icon for '''GTP/GDP'''

And click anywhere on the draw area.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"|
| style="border:0.75pt solid #000000;padding:0.071cm;"| Right click on the '''Reaction line''' and click on''' Add Anchor Point'''

Drag and drop the''' Reaction line''' anywhere on the draw area.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"|
| style="border:0.75pt solid #000000;padding:0.071cm;"| Next we will see how to '''align''' the components on the '''draw area.'''

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"|
| style="border:0.75pt solid #000000;padding:0.071cm;"| Let us come back to the''' Methionine '''biosynthesis process diagram window

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"|
| style="border:0.75pt solid #000000;padding:0.071cm;"| Click anywhere on the draw area to uncheck the highlighted '''Reaction line.'''

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Click on the multiple Species to be adjusted.
| style="border:0.75pt solid #000000;padding:0.071cm;"| Now, hold the ''''Shift'''' key and click on multiple '''Species''' on the '''draw area.'''

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Go to Edit menu >> point to Alignment >> select an '''Alignment type'''.
| style="border:0.75pt solid #000000;padding:0.071cm;"| Go to '''Edit''' menu, scroll down select '''Alignment''' and click on the '''Alignment type'''.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Cursor on icons for Alignment
| style="border:0.75pt solid #000000;padding:0.071cm;"| Alternately, click on the icon for '''Alignment '''on the toolbar.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"|
| style="border:0.75pt solid #000000;padding:0.071cm;"| Explore other '''Alignment''' options on the toolbar on your own.

<<PAUSE>>

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"|
| style="border:0.75pt solid #000000;padding:0.071cm;"| Let us undo the alignment and move ahead.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| How can we show/hide '''Reaction ids '''on a '''process diagram'''?

| style="border:0.75pt solid #000000;padding:0.071cm;"| While working on a '''Reaction''', how can we show/hide '''Reaction ids '''on a '''process diagram'''?

Let’s learn that.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Cursor on '''View-'''>uncheck '''Show Reaction Id'''

| style="border:0.75pt solid #000000;padding:0.071cm;"| Go to ''''View'''', scroll down and uncheck the ''''Show Reaction Id''''.

The '''Reaction ids''' on the respective reactions on the '''draw area''' will not be visible any more.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Cursor on '''View-'''>check '''Show Reaction Id'''

| style="border:0.75pt solid #000000;padding:0.071cm;"| In case, you wish to show the '''Reaction Id do the following.'''

Go to ''''View'''', scroll down and click on the ''''Show Reaction Id''''.

The '''Reaction ids''' will appear on the respective '''reactions''' on the '''draw area.'''

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"|
| style="border:0.75pt solid #000000;padding:0.071cm;"| We can also add notes to all the '''Components''' (Compartment, Species or Reaction) on the '''draw area'''.

Let us learn how to do that.

<<PAUSE>>

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Show cursor on a '''Species''' on the '''draw area.'''
| style="border:0.75pt solid #000000;padding:0.071cm;"| Right-click on a '''Species''' on the '''draw area'''.

I will click on '''CoA.'''

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Right-click >> display a pop-up menu >> select '''Species Notes.'''
| style="border:0.75pt solid #000000;padding:0.071cm;"| Scroll down and click on the ‘'''Species Notes'''’.

A pop up menu is displayed

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| In the dialog box type the text -

| style="border:0.75pt solid #000000;padding:0.071cm;"| A dialog box ''''Species Notes'''' pops up.

Type the text related to the '''Species'''

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| It is a semi-essential<sup> </sup>proteinogenic amino acid.

| style="border:0.75pt solid #000000;padding:0.071cm;"| I will type the following-

Coenzyme A

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Click ''''OK''''.
| style="border:0.75pt solid #000000;padding:0.071cm;"| Click ''''OK''''.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"|
| style="border:0.75pt solid #000000;padding:0.071cm;"| Observe that the notes information is displayed in the '''Notes Area'''.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Click on a Species >>Click on 'Edit Notes' at the bottom right corner of the CellDesigner Window.
| style="border:0.75pt solid #000000;padding:0.071cm;"| Alternately, to add notes to a '''Species''', click on a '''Species''' on the '''draw area.'''

I will click on''' Succinate.'''

Then, click on '''Edit Notes''' tab, located at the bottom right corner of the '''CellDesigner '''window.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Type the text and then click 'OK'
| style="border:0.75pt solid #000000;padding:0.071cm;"| A pop up window will appear.

Type the text related to the '''Species'''-

I will type and click ''''OK''''.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"|
| style="border:0.75pt solid #000000;padding:0.071cm;"| In the same manner we can edit a '''Protein'''.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Right click on a component
| style="border:0.75pt solid #000000;padding:0.071cm;"| To do so, right-click on a component on the '''draw area.'''

I will click on '''Homoserine succinyl transferase.'''

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Scroll down >>>click on Edit Protein
| style="border:0.75pt solid #000000;padding:0.071cm;"| Scroll down and click on '''Edit Protein'''.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| On window ‘Protein’ >>> Enter the name '''Hexokinase '''
| style="border:0.75pt solid #000000;padding:0.071cm;"| A dialog box named '''Protein''' appears on the screen.

Enter the name of the '''Protein '''in the name box.

I will type '''O-succinyltransferase '''in the name box.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Click on ‘Update’ >> close the dialog box.
| style="border:0.75pt solid #000000;padding:0.071cm;"| Click on '''‘Update’''' and close the dialog box.

<<PAUSE>>

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"|
| style="border:0.75pt solid #000000;padding:0.071cm;"| We can also add regions to a '''Protein'''.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Right-click on a '''Gene'''
| style="border:0.75pt solid #000000;padding:0.071cm;"| Right-click on a '''Protein''' on the '''draw area'''.

I will right click on '''O-succinyltransferase.'''

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Scroll down >> click on '''Edit Gene'''.
| style="border:0.75pt solid #000000;padding:0.071cm;"| Scroll down and click on '''Edit Protein'''.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Dialog box ''''Gene''''
| style="border:0.75pt solid #000000;padding:0.071cm;"| A dialog box named '''Protein''' appears on the screen.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Point to ‘'''Regions'''’ tab >> click on the ''''Add'''' button.
| style="border:0.75pt solid #000000;padding:0.071cm;"| Under the tab ‘'''residues/regions'''’, click on the ''''Add'''' button.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| In '''ModificationRegion/BindingRegion''' dialog box >> Select ‘'''Type'''’ as ‘'''Binding region'''’.
| style="border:0.75pt solid #000000;padding:0.071cm;"| In the dialog box -''' ModificationResidue/Bindingregion''':

Select the '''‘Type’''' from the drop down menu as ‘'''Binding region'''.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"|
| style="border:0.75pt solid #000000;padding:0.071cm;"| Change the size and angle by moving the cursor at the required value.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Select '''>> '''Size as 15 >>

Angle 38
| style="border:0.75pt solid #000000;padding:0.071cm;"| For this demo, I will select-

'''Size '''as 15 and

'''Angle''' 38

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Click on '''‘Close’'''
| style="border:0.75pt solid #000000;padding:0.071cm;"| Then click on ‘'''Close'''’.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Click on the ‘'''Update'''’ button
| style="border:0.75pt solid #000000;padding:0.071cm;"| Click on the '''Update'''

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Close the dialog box.
| style="border:0.75pt solid #000000;padding:0.071cm;"| And close the box.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"|
| style="border:0.75pt solid #000000;padding:0.071cm;"| As we do not require to add region in the '''Methionine Biosynthesis '''I will undo these changes.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"|
| style="border:0.75pt solid #000000;padding:0.071cm;"| Next, let us learn to edit information.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Right click on the '''Component'''.
| style="border:0.75pt solid #000000;padding:0.071cm;"| Right-click on the '''component '''on the '''draw area'''.

I will click on Homoserine.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Scroll down>>>click on ‘'''Edit Information’''' >> dialog box- '''‘Edit Information '''opens
| style="border:0.75pt solid #000000;padding:0.071cm;"| Scroll down and click on ‘'''Edit Information’.'''

A dialog box '''‘Edit Information’''' appears on screen

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| In the dialog box do the following'''- '''

* Under the tab ‘'''state'''’ select '''Open. '''
* Under the tab ‘'''prefix'''’ select '''pc. '''
* Under the tab '''‘label’ '''select '''pH.'''

| style="border:0.75pt solid #000000;padding:0.071cm;"| In the dialog box do the following'''- '''

* Under the tab ‘'''state'''’ select '''Open. '''
* Under the tab ‘'''prefix'''’ select '''mt. '''
* Under the tab '''‘label’ '''select '''dna.'''

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Click''' ‘OK'''
| style="border:0.75pt solid #000000;padding:0.071cm;"| Click''' '''on '''‘Ok’.'''

You can see the information '''mt:dna''' displayed on the draw area

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Cursor on '''undo '''
| style="border:0.75pt solid #000000;padding:0.071cm;"| I will '''undo Edit Information''' as we do not require it in '''Methionine Biosynthesis.'''

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Point to '''Bird's eye view'''
| style="border:0.75pt solid #000000;padding:0.071cm;"| In some cases, the '''process diagram''' can be a complicated one.

In such cases, '''Bird's eye view''' can help as it is convenient to navigate inside a big model.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Cursor on '''Bird’s Eye View''' in the Toolbar
| style="border:0.75pt solid #000000;padding:0.071cm;"| Click the '''Bird's eye''' '''view '''icon.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| Drag the red square in the '''Bird’s Eye View'''
| style="border:0.75pt solid #000000;padding:0.071cm;"| Drag the red square in the '''Bird’s Eye View'''.

Observe that the view on the '''draw area''' moves accordingly.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"|
| style="border:0.75pt solid #000000;padding:0.071cm;"| This brings us to the end of this tutorial.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| '''Slide 10'''

Summary
| style="border:0.75pt solid #000000;padding:0.071cm;"| Let us summarize.

In this tutorial, we have learnt how to:

* Change- color, shape and width of a '''Reaction line'''
* Add '''Anchor points''' to a '''Reaction line'''
* Align '''Components'''
* And show/hide '''Reaction id’s'''

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| '''Slide 11'''

Summary
| style="border:0.75pt solid #000000;padding:0.071cm;"| We have also learnt how to-

* Add notes to '''Components'''
* Edit '''Protein/Gene'''
* Edit Information
* And get the '''Bird’s Eye View '''of the diagram

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| '''Slide 12'''

Assignment
| style="border:0.75pt solid #000000;padding:0.071cm;"|

* Create a Glycolysis Process Diagram using tools in CellDesigner.
* Explore different shapes of '''Reaction line'''

''Hint: Orthogonal and Polyline''

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| '''Slide 13'''

Acknowledgement
| style="border:0.75pt solid #000000;padding:0.071cm;"| About the Spoken Tutorial project-

* Watch the video at the following link
* It summarizes the Spoken Tutorial project.
* If you do not have a good bandwidth please download and watch it.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| '''Slide 14'''
| style="border:0.75pt solid #000000;padding:0.071cm;"| The''' Spoken Tutorial Project '''Team -

* Conducts Workshops

* And gives certificates for those who pass an online test.

* For more details, please write to contact@spoken-tutorial.org

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"| '''Slide 15'''
| style="border:0.75pt solid #000000;padding:0.071cm;"| Spoken Tutorial Project is a part of '''Talk to a Teacher project.'''

It is funded by '''NMEICT, MHRD, Government of India'''.

More information on this Mission is available at the given link.

|-
| style="border:0.75pt solid #000000;padding:0.071cm;"|
| style="border:0.75pt solid #000000;padding:0.071cm;"| This is Bella Tony''' '''from''' IIT Bombay''' signing off.

Thank you for joining.

|}

@@ Line 185: / Line 185: @@
 I will select the same '''State Transition reaction line''' between-
-homoserine and succinyl homoserine.
+'''Homoserine''' and '''Succinyl Homoserine.'''
 |-
@@ Line 302: / Line 302: @@
 |-
-| style="border:0.75pt solid #000000;padding:0.071cm;"| It is a semi-essential<sup> </sup>proteinogenic amino acid.
+| style="border:0.75pt solid #000000;padding:0.071cm;"| Type Coenzyme A
-| style="border:0.75pt solid #000000;padding:0.071cm;"| I will type the following-
+| style="border:0.75pt solid #000000;padding:0.071cm;"| I will type the following.
-−
-Coenzyme A
 |-
@@ Line 376: / Line 374: @@
 |-
 | style="border:0.75pt solid #000000;padding:0.071cm;"| Dialog box ''''Gene''''
-| style="border:0.75pt solid #000000;padding:0.071cm;"| A dialog box named '''Protein''' appears on the screen.
+| style="border:0.75pt solid #000000;padding:0.071cm;"| A dialog box, '''Protein,''' appears on the screen.
 |-
@@ Line 416: / Line 414: @@
 |-
 | style="border:0.75pt solid #000000;padding:0.071cm;"|
-| style="border:0.75pt solid #000000;padding:0.071cm;"| As we do not require to add region in the '''Methionine Biosynthesis '''I will undo these changes.
+| style="border:0.75pt solid #000000;padding:0.071cm;"| As we do not require to add region in the '''Methionine Biosynthesis, '''I will undo these changes.
 |-
@@ Line 457: / Line 455: @@
 |-
 | style="border:0.75pt solid #000000;padding:0.071cm;"| Cursor on '''undo '''
-| style="border:0.75pt solid #000000;padding:0.071cm;"| I will '''undo Edit Information''' as we do not require it in '''Methionine Biosynthesis.'''
+| style="border:0.75pt solid #000000;padding:0.071cm;"| I will undo '''Edit Information,''' as we do not require it in '''Methionine Biosynthesis.'''
 |-

@@ Line 2: / Line 2: @@
 {| style="border-spacing:0;"
 | style="border:0.75pt solid #000000;padding:0.071cm;"| <center>'''Visual Cue'''</center>
-| style="border:0.75pt solid #000000;padding:0.071cm;"| '''Narration'''
+| style="border:0.75pt solid #000000;padding:0.071cm;"| <center>'''Narration'''</center>
 |-

CellDesigner/C3/Customizing-Diagram-Layout/English - Revision history

Nancyvarkey at 08:34, 6 May 2016

Bellatony911 at 09:30, 3 May 2016

Bellatony911: Created page with " {| style="border-spacing:0;" | style="border:0.75pt solid #000000;padding:0.071cm;"| '''Visual Cue''' | style="border:0.75pt solid #000000;padding:0.071cm;"|..."