Sakinashaikh: Created page with ''''Title of script''': Installation '''Author: Reshma & Sakina''' '''Keywords:'''Installation of CellDesigner4.3 {| style="border-spacing:0;" ! Visual Cue !…'

2013-06-03T10:20:32Z

Created page with ''''Title of script''': Installation '''Author: Reshma & Sakina''' '''Keywords:'''Installation of CellDesigner4.3 {| style="border-spacing:0;" ! <center>Visual Cue</center> !…'

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'''Title of script''': Installation

'''Author: Reshma & Sakina'''

'''Keywords:'''Installation of CellDesigner4.3

{| style="border-spacing:0;"
! <center>Visual Cue</center>
! <center>Narration</center>

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Slide
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| Welcome to the spoken tutorial on Installation of '''CellDesigner'''

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Slide

Download & installation of CellDesigner 4.3
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| In this tutorial we will learn

* to download and install '''CellDesigner 4.3 '''
* on '''Windows''' Operating System.

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Slide

System Requirements
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| To record this tutorial, I am using

* '''Windows XP''' and
* '''CellDesigner''' version 4.3<br/> Please note that '''CellDesigner''' works on '''Linux''' and '''Mac OS X''' also.

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Go to website

www.celldesigner.org
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| Please note you need to be an admin user if you want to install any software.

You can download '''CellDesigner''' from '''celldesigner.org''' website

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Click on ''downloads'' tab
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| On the '''home page,''' you will find '''downloads''' tab.

Click on it.

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Click on ''Download CellDesigner''
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| It will take you to another page.

Now, click on '''Download CellDesigner.'''

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Scroll upto ''Download'' heading
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| Scroll down.

Under '''Download''' heading, four links are present.

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Click on '''''Download for windows 32 bit''''
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| Click on the first link i.e. '''Download for windows 32 bit'''.

It will take you to another page.

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Point to the 2 options.
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| Here there are two options - '''Registered User''' and '''First Time User'''

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Select '''First Time User '''& Click on '''Continue'''
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| Select '''First Time User'''.

Click on '''Continue '''button.

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Click on '''Download'''
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| Fill in your details.

You need to fill in this information only once.

Later if you want to install any new version you need to click on Registered user. Type the email address and password and you will get the set up file.

Now, click on '''Download.'''

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Select '''Save File'''
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| This will open a small window for the '''set-up''' file.

Select '''Save File.'''

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"|
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| This will start downloading the '''set-up '''file. It will take few minutes.

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"|
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| After downloading the '''set-up '''file, '''CellDesigner '''window pops up.

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Click on '''''Next''''' button
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| Click on '''Next''' button

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Select '''''I accept the agreement'''''
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| Select the option '''I accept the agreement.'''

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Click on '''''Next''''' button
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| Click on '''Next''' button.

Select a destination folder to install '''CellDesigner''' on your computer.

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Click on '''''Next''''' button
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| Click on '''Next''' button

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Click on '''''Next''''' button
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| Click on '''Next''' button

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Click on '''''Finish''''' button
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| Click on '''Finish''' button to complete the installation procedure.

This will launch '''CellDesigner4.3''' on your computer.

Click on the shortcut CellDesigner icon on the Desktop to open CellDesigner.

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Show CellDesigner Interface
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| Now, this is the '''CellDesigner''' '''Interface'''.

We will learn about the menu bars , tool bars and various panels in the coming tutorials.

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Slide-Example Network

(Also show network in CellDesigner)

Enzyme Substrate reaction

| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| This is a model drawn with the help of '''CellDesigner.'''

Here the substrate binds with the enzyme, and an enzyme-substrate complex is formed. The substrate is transformed into product.

Let us see this model in CellDesigner

We can draw many such biological networks using '''CellDesigner.'''

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Show the Model which will be drawn in the next tutorial
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| To test the installation has happened properly let just add a protein here.

Lets go to File, add new. I will name this file as trial. Click on OK.

I will click on protein icon. Click here and

Name it as 'A'. In the next tutorial we shall continue with this and make this model.

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"|
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| This brings us to the end of this spoken tutorial of CellDesigner.

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Summary
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| In this tutorial we learnt

* to download and install CellDesigner 4.3
* in Windows Operating System

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Show About Slide

About the Spoken Tutorial Project

* Watch the video available at-<br/> [http://spoken-tutorial.org/What_is_a_Spoken_Tutorial http://spoken-][http://spoken-tutorial.org/What_is_a_Spoken_Tutorial tutorial.org/What_is_a_Spoke][http://spoken-tutorial.org/What_is_a_Spoken_Tutorial n_Tutorial]
* It summarises the Spoken Tutorial project
* If you do not have good bandwidth, you can download and watch it

| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| * Watch the video available at the following link

* It summarises the Spoken Tutorial project
* If you do not have good bandwidth, you can download and watch it

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Show About Slide

Spoken Tutorial Workshops

The Spoken Tutorial Project Team

* Conducts workshops using spoken tutorials

* Gives certificates for those who pass an online test

* For more details, please write to contact@spoken-tutorial.org

| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| The Spoken Tutorial Project Team

* Conducts workshops using spoken tutorials

* Gives certificates for those who pass an online test

* For more details, please write to contact at spoken hyphen tutorial dot org

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"| Show Slide

Funding Support

* Spoken Tutorial Project is a part of the Talk to a Teacher project

* It is supported by the National Mission on Education through ICT, MHRD, Government of India

* More information on this Mission is available at

* [http://spoken-tutorial.org/NMEICT-Intro http://spoken-tutorial.org/NMEICT-Intro]

| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| * Spoken Tutorial Project is a part of the Talk to a Teacher project

* It is supported by the National Mission on Education through ICT, MHRD, Government of India

* More information on this Mission is available at

* spoken hyphen tutorial dot org slash NMEICT hyphen Intro

|-
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:none;padding:0.097cm;"|
| style="border-top:none;border-bottom:0.035cm solid #000000;border-left:0.035cm solid #000000;border-right:0.035cm solid #000000;padding:0.097cm;"| This is Sakina Shaikh from IIT Bombay signing off. Thanks for joining. Goodbye.

|}

CellDesigner/C2/Installation-of-CellDesigner/English - Revision history

Sakinashaikh: Created page with ''''Title of script''': Installation '''Author: Reshma & Sakina''' '''Keywords:'''Installation of CellDesigner4.3 {| style="border-spacing:0;" ! Visual Cue !…'