Avogadro - Revision history

Madhurig at 07:03, 18 November 2019

2019-11-18T07:03:43Z

PoojaMoolya at 08:55, 7 May 2019

2019-05-07T08:55:05Z

PoojaMoolya at 05:37, 6 May 2019

2019-05-06T05:37:07Z

PoojaMoolya at 05:36, 6 May 2019

2019-05-06T05:36:47Z

Snehalathak at 12:56, 23 April 2019

2019-04-23T12:56:07Z

Pratik kamble at 12:07, 28 July 2017

2017-07-28T12:07:38Z

Pratik kamble at 12:05, 28 July 2017

2017-07-28T12:05:39Z

Snehalathak at 10:35, 10 August 2016

2016-08-10T10:35:16Z

Snehalathak at 10:34, 10 August 2016

2016-08-10T10:34:32Z

Snehalathak at 10:33, 10 August 2016

2016-08-10T10:33:36Z

@@ Line 8: / Line 8: @@
-The Spoken Tutorial Effort for Avogadro has being contributed by Madhuri Ganapathi and Dr. Snehalatha Kaliappan'''.
+The Spoken Tutorial Effort for Avogadro has being contributed by Madhuri Ganapathi and Dr. Snehalatha Kaliappan'''
-'''''''''
@@ Line 16: / Line 15: @@
 https://script.spoken-tutorial.org/skins/common/images/button_bold.png
 __TOC__
@@ Line 22: / Line 22: @@
 ==Basic Level==
-'''1. Build Molecules'''
+'''1. Overview of Avogadro'''
 * Import Molecules from chemical database
@@ Line 33: / Line 44: @@
 * Build  DNA/RNA  molecules and peptides
-'''2. Edit Molecules'''
+'''3. Edit Molecules'''
 * Add and delete atoms
@@ Line 41: / Line 52: @@
 * Copy, paste and join structures.
-'''3. Create Surfaces'''
+'''4. Create Surfaces'''
 * View properties of the molecule
@@ Line 48: / Line 59: @@
 * Color the surface according to the electrostatic potential energies.
-'''4. Hydrogen Bonding'''
+'''5. Hydrogen Bonding'''
 * How to configure Avogadro
@@ Line 61: / Line 72: @@
 '''1. General Features in Avogadro'''
 * Proton transfer in compounds by changing pH values
 * Load crystal structures from Crystal library
@@ Line 70: / Line 82: @@
 '''2. Stereoisomerism'''
 * Define stereoisomerism
 * Define conformational isomerism
@@ Line 82: / Line 95: @@
 '''1. File Extensions'''
 * Prepare input files for computational chemistry programmes such as: GAMESS, Gaussian, MOPAC, NWChem  etc.
 * View Molecular orbitals and calculated IR  spectrum using output files generated from GAMESS and Gaussian software.

← Older revision		Revision as of 08:55, 7 May 2019
Line 12:		Line 12:


−	'''Learners''': Chemistry and Bioinformatics students.	+	'''Learners''': UG/PG Chemistry and Bioinformatics students.

@@ Line 10: / Line 10: @@
 The Spoken Tutorial Effort for Avogadro has being contributed by Madhuri Ganapathi and Dr. Snehalatha Kaliappan'''.
 '''''''''
 '''Learners''': Chemistry and Bioinformatics students.

← Older revision		Revision as of 05:36, 6 May 2019
Line 10:		Line 10:
	The Spoken Tutorial Effort for Avogadro has being contributed by Madhuri Ganapathi and Dr. Snehalatha Kaliappan'''.		The Spoken Tutorial Effort for Avogadro has being contributed by Madhuri Ganapathi and Dr. Snehalatha Kaliappan'''.
	'''''''''		'''''''''
		+
		+	'''Learners''': Chemistry and Bioinformatics students.

@@ Line 8: / Line 8: @@
-The Spoken Tutorial Effort for Avogadro has being contributed by Madhuri Ganapathi and Dr. Snehalatha Kaliappan.
+The Spoken Tutorial Effort for Avogadro has being contributed by Madhuri Ganapathi and Dr. Snehalatha Kaliappan'''.
+'''''''''
-−
 __TOC__

@@ Line 78: / Line 78: @@
 ==Advanced Level==
-'''6. File Extensions'''
+'''7. File Extensions'''
 * Prepare input files for computational chemistry programmes such as: GAMESS, Gaussian, MOPAC, NWChem  etc.
 * View Molecular orbitals and calculated IR  spectrum using output files generated from GAMESS and Gaussian software.

← Older revision		Revision as of 10:35, 10 August 2016
Line 81:		Line 81:
	* Prepare input files for computational chemistry programmes such as: GAMESS, Gaussian, MOPAC, NWChem etc.		* Prepare input files for computational chemistry programmes such as: GAMESS, Gaussian, MOPAC, NWChem etc.

−	* View Molecular orbitals and calculated IR spectrum using ~~outputfiles~~ generated from GAMESS and Gaussian software.	+	* View Molecular orbitals and calculated IR spectrum using output files generated from GAMESS and Gaussian software.

← Older revision		Revision as of 10:34, 10 August 2016
Line 5:		Line 5:
	Avogadro has features for high quality rendering, interactive tools, commands and powerful plug-in architecture. The features also include easy import of chemical files from Open Babel, multiple computational packages, crystals and biomolecules.		Avogadro has features for high quality rendering, interactive tools, commands and powerful plug-in architecture. The features also include easy import of chemical files from Open Babel, multiple computational packages, crystals and biomolecules.

−	It is easy to install and source code is available under GNU GPL.	+	It is easy to install and source code is available under GNU GPL.

@@ Line 1: / Line 1: @@
 '''Avogadro'''
-'''Avogadro''' is free and open source cross platform application.
+Avogadro is a free and open source, advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, material science, bioinformatics, etc.
-It offers a semantic chemical builder and platform for visualization and analysis. It offers an easy-to-use builder and integrated support for downloading from common databases such as '''PubChem''' and the '''Protein Data Bank'''. Default file format for '''Avogadro''' is CML but it supports  wide variety of file formats like .pdb, .mol, .cif and others.
-The Spoken Tutorial Effort for Avogadro has being contributed by Madhuri Ganapathi and Dr. Snehalatha Kalliappan.
+ It is easy to install and source code is available under GNU GPL.